View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20075_low_16 (Length: 205)
Name: NF20075_low_16
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20075_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 41953407 - 41953572
Alignment:
| Q |
14 |
aacccgtggaattagtaggggttatttaggggcgtgtaatttgatatacatacaaattttaaggggaaccactttgatagatggtggtaaacgttgaatc |
113 |
Q |
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| T |
41953407 |
aacctgtggaattagtaggggttatttaggggcgtgtaatgtgatatacatacaaattttaaggggaaccactttgatagatggtggtaaacgttgaatc |
41953506 |
T |
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| Q |
114 |
cgtatttgaaaaccattttaaaacattatgaatgattgatgtcattctagaagctcatggccattc |
179 |
Q |
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| T |
41953507 |
cgtatttgaaaaccattttaaaacattaagaatgattgatgtcattctagaagctcatggccattc |
41953572 |
T |
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