View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20075_low_3 (Length: 703)
Name: NF20075_low_3
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20075_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 157 - 687
Target Start/End: Original strand, 36947882 - 36948412
Alignment:
| Q |
157 |
gtttggatagatatagggacagagcagaaaaagtccccaacaacattgtaccacaatatttatcggcagaagaccccaaccccacattcaaagacatggt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
36947882 |
gtttggatagatatagggacagagcagaaaaagtccccaacaacattgtaccacaatatttatcggcagaagtccccaaccccacatttaaagacatggt |
36947981 |
T |
|
| Q |
257 |
agagacactgatattggtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatgt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36947982 |
agagacactgatattggtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatgt |
36948081 |
T |
|
| Q |
357 |
catgcaatgtttcaagcattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaacacttggattaactg |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36948082 |
catgcaatgtttcaagcattcattatcttcatcacaatatcattattcagttccattagttctattatcatactcttttgggcaacacttggattaactg |
36948181 |
T |
|
| Q |
457 |
aattggtgaaattctctctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcag |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36948182 |
aattggtgaaattctctctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcag |
36948281 |
T |
|
| Q |
557 |
tgaacttacttggttggcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatca |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36948282 |
tgaacttacttggttggcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatca |
36948381 |
T |
|
| Q |
657 |
actagcataccattgcggtacatttcctact |
687 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36948382 |
actagcataccattgcggtacatttcctact |
36948412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 273 - 682
Target Start/End: Original strand, 36956074 - 36956483
Alignment:
| Q |
273 |
gtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatgtcatgcaatgtttcaag |
372 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||| || | |
|
|
| T |
36956074 |
gtttcaacacttataatcacagcatcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacaatctatgtcatgcaatgttccatg |
36956173 |
T |
|
| Q |
373 |
cattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaacacttggattaactgaattggtgaaattctc |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| | || | |
|
|
| T |
36956174 |
ttttcattatcttcatcacaatatcattgttcagttcaattagtgctaccatcatactcttttgggcaacacttggattaactgaattggtaacttttac |
36956273 |
T |
|
| Q |
473 |
tctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcagtgaacttacttggttg |
572 |
Q |
| |
|
||| ||||||||| |||| ||||||||||||||||||| ||| | ||||| |||||||||||||| || ||||||||||| |||||||||| ||||||| |
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|
| T |
36956274 |
tctcaaaattgttgtgccgcttcttggaatcgctctcatttcattatcttttgctttcattgctggtctgtacactgttattagtgaacttaattggttg |
36956373 |
T |
|
| Q |
573 |
gcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatcaactagcataccattgc |
672 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
36956374 |
gcaaatgtgtttctggttatggctctgatttttgttgcggttgtgatttttttatatatgcttcttttccttccatcatcatcaactagcaagccattgc |
36956473 |
T |
|
| Q |
673 |
ggtacatttc |
682 |
Q |
| |
|
|||||||||| |
|
|
| T |
36956474 |
ggtacatttc |
36956483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 255 - 590
Target Start/End: Complemental strand, 37079739 - 37079404
Alignment:
| Q |
255 |
gtagagacactgatattggtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctat |
354 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37079739 |
gtagagacactcacattggtttcaacccttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaacaacctat |
37079640 |
T |
|
| Q |
355 |
gtcatgcaatgtttcaagcattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaacacttggattaac |
454 |
Q |
| |
|
||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || | |
|
|
| T |
37079639 |
gtcatgcaatgttccatgttttcattatattcatcacaatatcattgttcagttccattagttctactatcatactcttttgggcaaagcttggaatacc |
37079540 |
T |
|
| Q |
455 |
tgaattggtgaaattctctctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatc |
554 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
37079539 |
tgaattggtgactttctctctgaaaattgtgatgccacttcttggaatcgctctcgtctcactatctttggcttttatggctggactctacactgttatc |
37079440 |
T |
|
| Q |
555 |
agtgaacttacttggttggcaaatgtgtttctggtt |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37079439 |
agtgaacttacttggttggcaaatgtgtttctggtt |
37079404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 248 - 574
Target Start/End: Complemental strand, 37069986 - 37069660
Alignment:
| Q |
248 |
agacatggtagagacactgatattggtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaac |
347 |
Q |
| |
|
||||| |||||||||||| | |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37069986 |
agacagggtagagacactcacattggtttcaacacttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaac |
37069887 |
T |
|
| Q |
348 |
aacctatgtcatgcaatgtttcaagcattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaacacttg |
447 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
37069886 |
aacctatgtcatgcaatgttccaagctttcattatcttcatcacaatatcattgttcagttccattagttctactatcatactctttttggcaaaacttg |
37069787 |
T |
|
| Q |
448 |
gattaactgaattggtgaaattctctctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacac |
547 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| || ||||| ||||||||| ||||||||| || || |||||||||||||| |||| |||||||| |
|
|
| T |
37069786 |
gattaactgaattggtgactttctcactgaaaatcgtgttgccacttcttggaaccgctctcatttctctatctttggctttcatgactggtctctacac |
37069687 |
T |
|
| Q |
548 |
tgttatcagtgaacttacttggttggc |
574 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37069686 |
tgttatcagtgaacttacttggttggc |
37069660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 273 - 682
Target Start/End: Original strand, 36935220 - 36935629
Alignment:
| Q |
273 |
gtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatgtcatgcaatgtttcaag |
372 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| || |||||| |||||||||| ||||||||| |||| ||||||||| |||||||||| | |
|
|
| T |
36935220 |
gtttcaacacttataatcactgcttcagtagcagcatgtttagccgttccatgtgaagcagaaggaaaagcacacaatctatgtcatacaatgtttcatg |
36935319 |
T |
|
| Q |
373 |
cattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaacacttggattaactgaattggtgaaattctc |
472 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| |||||||||||| ||| || | |
|
|
| T |
36935320 |
ctttcattatcttcatcacagtatcattgttcagttccattagtgctaccatcatactcttttgggcaacatttgggttaactgaattgctgactttacc |
36935419 |
T |
|
| Q |
473 |
tctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcagtgaacttacttggttg |
572 |
Q |
| |
|
||| ||||| |||||||| |||||||||||||||| || || | |||||||||||||| ||||| ||||||||||||||||||||||| | ||||| |
|
|
| T |
36935420 |
tctcaaaatcgttatgccgcttcttggaatcgctcttattgcattatctttggctttcatggctggtctctacactgttatcagtgaactacgtcggttg |
36935519 |
T |
|
| Q |
573 |
gcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatcaactagcataccattgc |
672 |
Q |
| |
|
| |||||||||||||||||| || |||||||||| | |||| |||| | |||||| |||| ||||||||||||||| |||||||||||| || |||| |
|
|
| T |
36935520 |
tccaatgtgtttctggttatggcactgatttttgtcgccgttgtgattttgttatatgtgcttcttttccttccatcaccatcaactagcaaccccttgc |
36935619 |
T |
|
| Q |
673 |
ggtacatttc |
682 |
Q |
| |
|
|||||||||| |
|
|
| T |
36935620 |
ggtacatttc |
36935629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 36971641 - 36971718
Alignment:
| Q |
246 |
aaagacatggtagagacactgatattggtttcaacccttataatcactgcatcagtagcagcatgttttgctgttcca |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36971641 |
aaagacatggtagagacactgatattggtttcaacacttataatcactgcatcagtagcagcatgttttggtgttcca |
36971718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 36947736 - 36947797
Alignment:
| Q |
11 |
aagaatatcagcagcactagtctatattgaacaagaacatgaagaatcccaaaggagcaatg |
72 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36947736 |
aagaagatcagcagcactagtctatattgaacaagagcatgaagaatcccaaaggagcaatg |
36947797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 273 - 682
Target Start/End: Complemental strand, 12493750 - 12493341
Alignment:
| Q |
273 |
gtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatgtcatgcaatgtttcaag |
372 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||||||||| || | |
|
|
| T |
12493750 |
gtttcaacacttataatcactgcttcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacagcctatgtcatgcaatgttccatg |
12493651 |
T |
|
| Q |
373 |
cattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaacacttggattaactgaattggtgaaattctc |
472 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| | || | |
|
|
| T |
12493650 |
ctttcattatcttcatcacaatatcgttgttcagttccattagtgctactatcatactcttttgggcaacacttgggttaactgaattggtaacttttac |
12493551 |
T |
|
| Q |
473 |
tctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcagtgaacttacttggttg |
572 |
Q |
| |
|
||| ||||| || ||||| ||||||||||||||||||| || | |||||||||||||| ||| | || ||||||||||| |||||||||||||||||| |
|
|
| T |
12493550 |
tctcaaaatggtcatgccgcttcttggaatcgctctcatttcgttatctttggctttcatggctagtctttacactgttattagtgaacttacttggttg |
12493451 |
T |
|
| Q |
573 |
gcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatcaactagcataccattgc |
672 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||| ||||| |||| |||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
12493450 |
tcaaatgtgtctctggttatggcattgatttttattgcggttgtgattgcgttatatatgctcagtttccttccatcatcatcaactagcaagccattgc |
12493351 |
T |
|
| Q |
673 |
ggtacatttc |
682 |
Q |
| |
|
|||||||||| |
|
|
| T |
12493350 |
ggtacatttc |
12493341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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