View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20075_low_4 (Length: 609)
Name: NF20075_low_4
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20075_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 9 - 594
Target Start/End: Complemental strand, 41623945 - 41623360
Alignment:
| Q |
9 |
cacagaacaaaatacataagtaattaatacatgatgtatatgtaaatctttgtagaagaaacaaaccaaacaaccagaactaacaaagaaaaattataca |
108 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41623945 |
cacacaacaaaatacataagtaattattacatgatgtatatgtaaatctttgtagaagaaacaaaccaaacaaccagaactaacaaagaaaaattataca |
41623846 |
T |
|
| Q |
109 |
actacttcaaagtttctcctcttggcttgatttttgctcttaaagactccttcatcacaacagtaaactccatctttccagagaaatctatcttcttccc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41623845 |
actacttcaaagtttctcctcttggcttgatttttgctcttaaagactccttcatcacaacagtaaactccatctttccagagaaatctatcttcttccc |
41623746 |
T |
|
| Q |
209 |
tggtggataagcactccattcaaactcttgaaccatcctagccaacatcaaatgaatatgcacagtaccaatagccaaaccaggacaaatccttctccca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41623745 |
tggtggataagcactccattcaaactcttgaaccatcctagccaacatcaaatgaatatgcacagtaccaatagccaaaccaggacaaatccttctccca |
41623646 |
T |
|
| Q |
309 |
acaccaaatggcatcatttttactcctgtaacaccagttatatcagcttcctcatccttagaaagaaacctttcaggatcaaacttttcagggttggacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41623645 |
acaccaaatggcatcatttttactcctgtaacaccagttatatcagcttcctcacccttagaaagaaacctttcaggatcaaacttttcagggttggacc |
41623546 |
T |
|
| Q |
409 |
ataatttagggtcctcacctatgccagctgtatatacctcaacatttgcatcaattggtatatcataacctcctaatgtggtaggttcagtaacagcatg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41623545 |
ataatttagggtcctcacctatgccagctgtatatacctcaacatttgcatcaattggtatatcataacctcctaatgtggtaggttcagtaacagcatg |
41623446 |
T |
|
| Q |
509 |
tgttagtacaaaatgtgttggtggatgcttccttaataactctttcaccacagcttgtaaataaggcattttctcaacatcttttt |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41623445 |
tgttagtacaaaatgtgttggtggatgcttccttaataactctttcaccacagcttgtaaataaggcattttctcaacatcttttt |
41623360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University