View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20075_low_5 (Length: 603)
Name: NF20075_low_5
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20075_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 246 - 584
Target Start/End: Original strand, 41953839 - 41954177
Alignment:
| Q |
246 |
acagtaatacatagcttcattccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaat |
345 |
Q |
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| T |
41953839 |
acagtaaaacatagcttcattccataaaacacataacattacaaagggctaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaat |
41953938 |
T |
|
| Q |
346 |
tttagagaggtggtctactaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaatgc |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
41953939 |
tttagagaggtggtctactaaatcatgatgtaaattacacatactatttgcagagaaatgtgaggacttataccaacaatcatatccaaataaccaatgc |
41954038 |
T |
|
| Q |
446 |
atcaacactgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacgagtcannnnnnnggcttcatcacgag |
545 |
Q |
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| T |
41954039 |
atcaacaatgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacggatcatttttttggcttcatcacgag |
41954138 |
T |
|
| Q |
546 |
catttcgactataatcggtctcgatcttgtttactatgt |
584 |
Q |
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| T |
41954139 |
catttcgactttaattggtctcgatcttgtttactatgt |
41954177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 41953616 - 41953828
Alignment:
| Q |
11 |
cagagaaaaataagtaaaacggtnnnnnnnntcccctaaaaatcgaatttgagtattattggaacaatttgagttaaacgtaactcattaggtacttgaa |
110 |
Q |
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| T |
41953616 |
cagagaaaaataagtaaaacggtaaaaaaattcccctaaaaatcgaatttgagtattattggaacaatttgagttaaacgtaactcattaggtacttgaa |
41953715 |
T |
|
| Q |
111 |
cttaatctacgagagagaacacaattagtctatg-nnnnnnnnngcaaattttggattggaatctcaacactttagagttgactttatagaataaggttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41953716 |
cttaatctacgagagagaacacaattagtctatgaaaaaaaaaagcaaattttggattggaatctcaacactttagagttgactttatagaataaggttc |
41953815 |
T |
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| Q |
210 |
aacagttccaacc |
222 |
Q |
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||||||||||||| |
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| T |
41953816 |
aacagttccaacc |
41953828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 249 - 584
Target Start/End: Complemental strand, 35707624 - 35707290
Alignment:
| Q |
249 |
gtaatacatagcttcattccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaatttt |
348 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| || ||||||| |||||||||||| | |
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| T |
35707624 |
gtaaaacatagcttcattccataaaacacataacattacaaagggctaatattaatattgaaaggg---cattctccaacaatttcaaagagtaaattct |
35707528 |
T |
|
| Q |
349 |
agagaggtggtctactaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaatgcatc |
448 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
35707527 |
agagaggtggtctactaaatcatgatgtaaatcacacatattgtttgcagagaaatgtaaggacttaaaccaacaaccatatccaaataaccaatgcatc |
35707428 |
T |
|
| Q |
449 |
aacactgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacg--agtcannnnnnnggcttcatcacgagc |
546 |
Q |
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|||| |||||||| | ||||||||||||||||||||||||||||||| | ||||||||||| |||||| | ||| | |||||||||| || |
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| T |
35707427 |
aacattgtccatccgcagatattgacaaaggaaatgtgagaatccacagtctttctttctattcagttatggatatcatgtttttgacttcatcacgcgc |
35707328 |
T |
|
| Q |
547 |
atttcgactataatcggtctcgatcttgtttactatgt |
584 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||| |
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| T |
35707327 |
atttcgactataattggtcttgatcttgtttactatgt |
35707290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 246 - 576
Target Start/End: Original strand, 34221938 - 34222268
Alignment:
| Q |
246 |
acagtaatacatagcttcat---tccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagta |
342 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| |||||||||||| | ||||||||| |||||| ||| |||||||| ||||||| |||||||| |
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| T |
34221938 |
acagtaaaacatagcttcatcattccataaaacacaaaacattacaaagagctaatgttaacattgaagggg---cattccccaacaattttaaagagta |
34222034 |
T |
|
| Q |
343 |
aattttagagaggtggtctactaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaa |
442 |
Q |
| |
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|||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||| || |||||||||| |||||| ||||||||||||| || || |
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| T |
34222035 |
aattctagagaggtagtctactaaatcaagatgtaaattacacataaattttgcagagagatatgaggacttaaaccaactaccatatccaaataacgaa |
34222134 |
T |
|
| Q |
443 |
tgcatcaacactgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacgagtcannnnnnnggcttcatcac |
542 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||| ||||||||||| |
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| T |
34222135 |
tgcatcaacattgtccatccactgatattgacaaaggaaatgtgagaatccacaatctttctttctattcaggtacggatcatttttttggcttcatcac |
34222234 |
T |
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| Q |
543 |
gagcatttcgactataatcggtctcgatcttgtt |
576 |
Q |
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| T |
34222235 |
gcgcatttcgactataattggtctcgatcttgtt |
34222268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 262 - 576
Target Start/End: Complemental strand, 3340614 - 3340302
Alignment:
| Q |
262 |
tcattccataaaacacataacattacaaaggggtaatgttaatattgaaagggtgccattcccctacaatttaaaagagtaaattttagagaggtggtct |
361 |
Q |
| |
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|||||||||||||||| |||| ||||||||| ||||||||| |||||| ||| |||| ||| ||||||| |||||||||||| ||||||||| |||| |
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| T |
3340614 |
tcattccataaaacactaaacaatacaaagggctaatgttaacattgaagggg---catttcccaacaattttaaagagtaaattctagagaggtagtct |
3340518 |
T |
|
| Q |
362 |
actaaatcatgatgtaaattacacatactgtttgcagagaaatgtgaggacttataccaacaaccatatccaaatgaccaatgcatcaacactgtccatc |
461 |
Q |
| |
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||||||||| ||||||||||||| ||| |||||||||| ||||||||||||| | |||| ||||||||||||| ||||||||||||||| |||||||| |
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| T |
3340517 |
actaaatcaagatgtaaattacaaataaattttgcagagagatgtgaggacttaaatcaactaccatatccaaataaccaatgcatcaacattgtccatc |
3340418 |
T |
|
| Q |
462 |
aactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacgagtca-nnnnnnnggcttcatcacgagcatttcgactataat |
560 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
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| T |
3340417 |
cgctgatattgacaaaggaaatgtgagaatccacaatctttctttctatccagttacggatcattttttttagcttcatcacgcgcatttcgactataat |
3340318 |
T |
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| Q |
561 |
cggtctcgatcttgtt |
576 |
Q |
| |
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||||||||||||||| |
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| T |
3340317 |
tggtctcgatcttgtt |
3340302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 449 - 519
Target Start/End: Complemental strand, 15009267 - 15009197
Alignment:
| Q |
449 |
aacactgtccatcaactgatattgacaaaggaaatgtgagaatccacaatttttctttctatccagttacg |
519 |
Q |
| |
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||||||||||||| |||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| |
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| T |
15009267 |
aacactgtccatccgctgataatgacaaagtaattgtgagaatccacagttttttcttctatccagttacg |
15009197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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