View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20075_low_7 (Length: 377)
Name: NF20075_low_7
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20075_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 9601137 - 9601496
Alignment:
| Q |
3 |
aggagcagcacagagaaagcaaagaaggggtttaagtttccaactggcccggttctgattgggtgcttcgtcttcataattgttggatcatgtatgtttt |
102 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9601137 |
aggagcatcacaaagaaagcaaagaaggggtttaagtttccaactggcccggttctgattgggtgcttcgtcttcataattgttggatcatgtatgttct |
9601236 |
T |
|
| Q |
103 |
taacgtcgattactttgacaggtgttgcacaatggatctgtatttgaaaattgtttgaaacttttaatgatgatttacaaagtagagtctaaaacatcct |
202 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
9601237 |
taacgtcaattactttgataggtgttgcacaatggatctgtatttgaaaattgtttgaaacttttaatgatgatttataaagtagagtctaaaatatcct |
9601336 |
T |
|
| Q |
203 |
ttgtccttaaggttgatacaatgattagatcaatgttgattcaacaaaacaagaaaaacgaatatgtctatcttaaaacttgatccatatttgattttcc |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
9601337 |
ttatccttaaggttgatacaatgattagatcaatgttgattcaacaaaacaagaaaaacgaatatgtctatcttaaaacttgatccatattcgatttttc |
9601436 |
T |
|
| Q |
303 |
ttgttttgtcaaatcaacatcgattaggtcttcgtctcagccttaagtacaagtcattgt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9601437 |
ttgttttgtcaaatcaacatcgattaggtcttcgtctcagccttaaggacaagtcattgt |
9601496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University