View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20075_low_9 (Length: 296)

Name: NF20075_low_9
Description: NF20075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20075_low_9
NF20075_low_9
[»] chr2 (1 HSPs)
chr2 (18-287)||(42960684-42960953)
[»] chr5 (1 HSPs)
chr5 (109-275)||(35607889-35608055)
[»] chr8 (2 HSPs)
chr8 (188-265)||(11791979-11792056)
chr8 (200-265)||(29858345-29858410)
[»] chr6 (4 HSPs)
chr6 (198-265)||(7712361-7712428)
chr6 (199-261)||(10890479-10890538)
chr6 (211-273)||(473905-473967)
chr6 (199-264)||(12117149-12117214)
[»] chr7 (2 HSPs)
chr7 (200-273)||(3182435-3182508)
chr7 (198-257)||(37702076-37702135)
[»] chr3 (2 HSPs)
chr3 (189-265)||(13873370-13873445)
chr3 (199-252)||(32783461-32783514)
[»] chr4 (1 HSPs)
chr4 (198-257)||(56081265-56081324)
[»] chr1 (1 HSPs)
chr1 (189-244)||(2443403-2443458)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 42960953 - 42960684
Alignment:
Q  18 ttttgttcctcttaagaaatcagttaaacaatcattgatagaaacagttggtattaccaataagggtgtgtatattgaagctagctgtggatttggacag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960953 ttttgttcctcttaagaaatcagttaaacaatcattgatagaaacagttggtattaccaataagggtgtgtatattgaagctagctgtggatttggacag 42960854  T
Q  118 accaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacacaaaaatttg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42960853 accaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacacacaaatttg 42960754  T
Q  218 tcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatcaagtttagtatat 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960753 tcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatcaagtttagtatat 42960684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 109 - 275
Target Start/End: Original strand, 35607889 - 35608055
Alignment:
Q  109 tttggacagaccaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacac 208  Q
    ||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | | ||||| ||||    
T  35607889 tttggacagaccaatgacagcattcattgccaccatggtttgttgtcagctgagatatgtcttcactcatcacctaatttgagttgtttaattttcacac 35607988  T
Q  209 aaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatca 275  Q
    | ||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  35607989 acaaaattgacattaaatttctagaacaaattagatggttaacatagttcaaatatgcagttaatca 35608055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 11791979 - 11792056
Alignment:
Q  188 tgagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 265  Q
    |||||| ||| ||||||||| || |||||| ||| ||||||||||||||||||||| |||||||| | |||| |||||    
T  11791979 tgagttgtgtgattttgacataagaatttgacatcaaatttcgacaacaaattagacggttaacacaattcacatatg 11792056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 29858345 - 29858410
Alignment:
Q  200 ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 265  Q
    |||||| ||||||||||| ||| ||||||||||  ||| ||||| |||||||||| ||||||||||    
T  29858345 ttttgaaacaaaaatttgacatcaaatttcgacgtcaatttagaaggttaacataattcaaatatg 29858410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 7712428 - 7712361
Alignment:
Q  198 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 265  Q
    ||||||||||||  ||||||  |  ||||||||||||||  |||||||||||||||||||||||||||    
T  7712428 tattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacatagttcaaatatg 7712361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 10890538 - 10890479
Alignment:
Q  199 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaa 261  Q
    |||||||||||||  |||| |||||| ||||||||||||| ||||||||||||| ||||||||    
T  10890538 attttgacacaaa--tttgacattaa-tttcgacaacaaactagatggttaacagagttcaaa 10890479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 473967 - 473905
Alignment:
Q  211 aaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat 273  Q
    ||||||| ||| ||||||| || |||||||||||| ||||||||||| | ||||| |||||||    
T  473967 aaatttgacatgaaatttcaaccacaaattagatgattaacatagtttacatatgtggctaat 473905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 12117214 - 12117149
Alignment:
Q  199 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatat 264  Q
    ||||||||||| ||||||| ||| ||| ||| ||||||| ||| ||||||||  ||||||||||||    
T  12117214 attttgacacacaaatttgacatcaaacttcaacaacaatttatatggttaatgtagttcaaatat 12117149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 3182435 - 3182508
Alignment:
Q  200 ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat 273  Q
    |||||| ||||||||||| ||  ||||||||||||| | ||||||||||||  ||||| ||||||| |||||||    
T  3182435 ttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggctaat 3182508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 37702135 - 37702076
Alignment:
Q  198 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt 257  Q
    |||||||| ||| ||||||||||| ||||||| |||||||||||||| ||| | ||||||    
T  37702135 tattttgaaacacaaatttgtcatcaaatttcaacaacaaattagatagttgatatagtt 37702076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 13873370 - 13873445
Alignment:
Q  189 gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 265  Q
    ||||| ||||| ||||||||||||||| | ||||||| |||||||| ||| || || |||||||||||| |||||||    
T  13873370 gagttgtgttactttgacacaaaaatt-gacattaaaattcgacaaaaaactaaattgttaacatagtttaaatatg 13873445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 32783514 - 32783461
Alignment:
Q  199 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaaca 252  Q
    ||||||||||| ||||||| | | ||||||| ||||||||||||| ||||||||    
T  32783514 attttgacacacaaatttgacttcaaatttcaacaacaaattagacggttaaca 32783461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 56081324 - 56081265
Alignment:
Q  198 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt 257  Q
    |||||||||||||||||||| ||| ||| || |||||||| ||||||| |||||| ||||    
T  56081324 tattttgacacaaaaatttgacataaaaatttgacaacaatttagatgattaacacagtt 56081265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 2443403 - 2443458
Alignment:
Q  189 gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagat 244  Q
    ||||| |||||||||||||||||||||   ||| ||||||||||| ||||||||||    
T  2443403 gagttgtgttattttgacacaaaaattcaacatcaaatttcgacaccaaattagat 2443458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University