View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_11 (Length: 478)
Name: NF20076_high_11
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 47501702 - 47501247
Alignment:
| Q |
13 |
agcagagaggtgaataacatatcccccagcaaaatcaataaccccacgtttagccaaccaaccatcaggacaccaaatactaaaggcaacaacagtgtac |
112 |
Q |
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| T |
47501702 |
agcagagaggtgaataacatatcccccagcaaaatcaataaccccacgtttagccaaccaaccatcaggacaccaaatactaaaggcaacaacagtgtac |
47501603 |
T |
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| Q |
113 |
gagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagctatcaaaatcaaagtaagaccagcgaaaa |
212 |
Q |
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| T |
47501602 |
gagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagctatcaaaatcaaagtaagaccagcgaaaa |
47501503 |
T |
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| Q |
213 |
caccttgataaaataccattgtagcattaggaaaattccccaaaaatgctttccccaacaaaaacttttcatctaatgctacatttggtttccctaagaa |
312 |
Q |
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| T |
47501502 |
caccttgataaaataccattgtagcattaggaaaattccccaaaaatgctttccccaacaaaaacttttcatctaatgctacatttggtttccctaagaa |
47501403 |
T |
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| Q |
313 |
aaataccattttctccccaaatgacatttggtatgcccatgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttata |
412 |
Q |
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| T |
47501402 |
aaataccattttctccccaaatgacatttggtatgcccatgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttata |
47501303 |
T |
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| Q |
413 |
gcccatgttttcttcactaggcttccgtaaagtatgacaagcccgggaatgctttg |
468 |
Q |
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| T |
47501302 |
gcccatgttttcttcactaggcttccgtaaagtatgacaagcccgggaatgctttg |
47501247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 13349950 - 13350111
Alignment:
| Q |
85 |
ccaaatactaaaggcaacaacagtgtacgagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagct |
184 |
Q |
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|||||||||||| ||| || |||||| ||||| || | ||| | |||||||||| |||||| ||| | |||||||||||| | | |||||||||| |
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| T |
13349950 |
ccaaatactaaaagcagtaaaagtgtaagagaaagtgagccataaaggcacaaacatcatccaagcatagaagttcattctccccaacacagcaccagct |
13350049 |
T |
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| Q |
185 |
atcaaaatcaaagtaagaccagcgaaaacaccttgataaaataccattgtagcattaggaaa |
246 |
Q |
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| T |
13350050 |
atcaaaatcaaagtaatagcagcaaaaacacattgaaaataaatcatagtagcatttggaaa |
13350111 |
T |
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