View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_12 (Length: 477)
Name: NF20076_high_12
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 49698898 - 49698446
Alignment:
| Q |
18 |
ataagaattatataacaaaaattaataac-aagcatacctgtagcgacggtcattgggggagatggttcttcgacggagtttggttcttttggctccgaa |
116 |
Q |
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| T |
49698898 |
ataagaattatataacaaaaattaataacgaagcatacctgtagcgacggtcattgggggagatggttcttcgacggagtttggttcttttggctccgaa |
49698799 |
T |
|
| Q |
117 |
atcgcctagaggcggaagtggagctccgccggtgaggctgtacatgctgccatcatcgtgttccgggagaattccatctccattatgattttccatcatg |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698798 |
atcgcctagaggcggaagtggagctccgccagtgaggctgtacatgctgccatcatcgtgttccgggagaattccatctccattatgattttccatcatg |
49698699 |
T |
|
| Q |
217 |
ttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698698 |
ttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaattt |
49698599 |
T |
|
| Q |
317 |
cttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcattatatgattaatcaccatgcaacactagcttctttattaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49698598 |
cttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcattatatgattaatcaccatgcaacaccagcttctttattaa |
49698499 |
T |
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| Q |
417 |
ttctctggagatggaatttgtgtggtattgtatggtgttaattgcttcttctc |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698498 |
ttctctggagatggaatttgtgtggtattgtatggtgttaattgcttcttctc |
49698446 |
T |
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