View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_13 (Length: 475)
Name: NF20076_high_13
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 142 - 457
Target Start/End: Original strand, 39930151 - 39930465
Alignment:
| Q |
142 |
agaattcattgcgaaatatccttcccagtagatattagcatgaatgttatccaatgcattgctcactgcaaatgaaatcaagataaaaatatcaaagtaa |
241 |
Q |
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| T |
39930151 |
agaattcattgcgaaatatccttcccagtagatatgagcatgaatgttatccaatgcattgctcactgcaaatgaaatcaagataaaaaaatcaaagtaa |
39930250 |
T |
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| Q |
242 |
tgcttcgagagattaggaacgttattaggtctaacattgatggtggaaaaggtacttttgcatattaaggctatgcaagtactaccaattaggaatctga |
341 |
Q |
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| T |
39930251 |
tgcttcgagagattaggaacgttattaggtctaacattgatggtggaaaaggtacttttgcatattaaggctatgcaag---taccaattaggaatctga |
39930347 |
T |
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| Q |
342 |
actg--nnnnnnnnngttggattgtataatccaatcgaaggtaataatggaaattcagagggcgcgtgagaaacgcggaggtgggaaaataaattcttta |
439 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
39930348 |
actgtttttttttttgttggattgtataatccaatcggaggtaataatggaaattcagagggcgcgtgagaaacacggaggtgggaaaagaaattcttta |
39930447 |
T |
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| Q |
440 |
agaagaaaaggaaagagg |
457 |
Q |
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| T |
39930448 |
agaagaaaaagaaagagg |
39930465 |
T |
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