View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20076_high_14 (Length: 471)
Name: NF20076_high_14
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_14 |
 | |
|
| [»] scaffold1163 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 5952215 - 5951765
Alignment:
| Q |
18 |
atctgctcagtaacctcaaacaccaatccatcatgcaattctatacctcgtggattgatgtcgacaaccggactttcaacttcattacagaaatgttcac |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5952215 |
atctcctcagtaacctcaaacaccaatccatcatgcaattctatacctcgtggattgatgtcgacaaccgaactttcaacttcattacagaaatgttcac |
5952116 |
T |
|
| Q |
118 |
ttctggaacacttagagagtaaccacatgaacataatctctatttcactttcttttgactagttttgtgtttaatcagtaattgataagttttcggattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5952115 |
ttctggaacacttagagagtaaccacatgaacataatctctatttcacttttttttgactagttttgtgtttaatcagtaattgataagttttcggattt |
5952016 |
T |
|
| Q |
218 |
tgcagatacaggaagaaatataagcatgtagacatgcaagcaataaagagttgggttcgccaaatcttacacggtcttgtttatctacatgagcatgatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5952015 |
tgcagatacaggaagaaatataagcatgtagacatgcaagcaataaagagttgggttcgccaaatcttacacggtcttgtttatctacatgagcatgatc |
5951916 |
T |
|
| Q |
318 |
ctccggtaattcatagagacctcaagtgcgataacatatttgtcaatggccatcttggacaagtgaaaattggtgacctaggtctagcagcgattcttcg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5951915 |
ctccggtaattcatagagacctcaagtgcgataacatatttgtcaatggccatcttggacaagtgaaaattggtgacctgggtctagcagcgattcttcg |
5951816 |
T |
|
| Q |
418 |
tggttcgcagccggcacacagtgttataggtacttattttgatattcttcg |
468 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
5951815 |
tggttcgcagccggcacacagtgttattggtacttattttgatatccttcg |
5951765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 254 - 453
Target Start/End: Complemental strand, 31952203 - 31952004
Alignment:
| Q |
254 |
caagcaataaagagttgggttcgccaaatcttacacggtcttgtttatctacatgagcatgatcctccggtaattcatagagacctcaagtgcgataaca |
353 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||| |||||| |||||| |||||||| || ||||| ||||| ||||| || || ||||||| |
|
|
| T |
31952203 |
caagcaataaagagttgggcgcgccaaattttacaaggtctagtttatttacatggccatgatccacctgtaatccatagggacctaaaatgtgataaca |
31952104 |
T |
|
| Q |
354 |
tatttgtcaatggccatcttggacaagtgaaaattggtgacctaggtctagcagcgattcttcgtggttcgcagccggcacacagtgttataggtactta |
453 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || ||||| || ||||| | ||||| || | || || ||||||||||||||||| |
|
|
| T |
31952103 |
tatttgtcaatggtcatcttggacaagtgaaaattggtgaccttggactagctgcaattctccaaggttctcaatcagctcatagtgttataggtactta |
31952004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 299 - 457
Target Start/End: Original strand, 28188292 - 28188450
Alignment:
| Q |
299 |
tatctacatgagcatgatcctccggtaattcatagagacctcaagtgcgataacatatttgtcaatggccatcttggacaagtgaaaattggtgacctag |
398 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||| |||||||||||| | | |
|
|
| T |
28188292 |
tatctacatgaacatgatcatccagtaattcatagggacctcaagtgtgataacatacttgtcaatggacatcttggacaaacaaaaattggtgacttgg |
28188391 |
T |
|
| Q |
399 |
gtctagcagcgattcttcgtggttcgcagccggcacacagtgttataggtacttatttt |
457 |
Q |
| |
|
||||| ||||||||||||||| |||||| || | |||||||||||| ||||||||||| |
|
|
| T |
28188392 |
gtctaacagcgattcttcgtgtttcgcaaccaacgcacagtgttataagtacttatttt |
28188450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 258 - 457
Target Start/End: Complemental strand, 18077978 - 18077779
Alignment:
| Q |
258 |
caataaagagttgggttcgccaaatcttacacggtcttgtttatctacatgagcatgatcctccggtaattcatagagacctcaagtgcgataacatatt |
357 |
Q |
| |
|
||||||||||||||| || ||||| ||| | |||||||||||||||||||| |||||||| | |||||||||||| ||||||| | |||| |||| |
|
|
| T |
18077978 |
caataaagagttgggcacgtcaaatgttagagggtcttgtttatctacatgaacatgatccacgggtaattcataggaacctcaaacgtgatatagtatt |
18077879 |
T |
|
| Q |
358 |
tgtcaatggccatcttggacaagtgaaaattggtgacctaggtctagcagcgattcttcgtggttcgcagccggcacacagtgttataggtacttatttt |
457 |
Q |
| |
|
||||||||| | |||| |||||||||||| || | || || ||||||||| |||||| | |||||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
18077878 |
tgtcaatggacgtctttgacaagtgaaaactgtttacttaagtctagcagggattctccatggttcatagccagcacacagtgttataggtacttgtttt |
18077779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 394
Target Start/End: Original strand, 28153709 - 28153806
Alignment:
| Q |
299 |
tatctacatgagcatgatcctccggtaattcatagagacctcaagtgcgata--acatatttgtcaatggccatcttggacaagtgaaaattggtgac |
394 |
Q |
| |
|
||||||||||| ||||||| ||| |||| |||||| ||||||||||| |||| ||||| |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
28153709 |
tatctacatgaacatgatcatccagtaactcatagggacctcaagtgtgatataacatacttgtcaatggacatcttggacaagcaaaaattggtgac |
28153806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 269
Target Start/End: Complemental strand, 22397308 - 22397077
Alignment:
| Q |
48 |
tcatgcaattctatacctcgtggattgatgtcgacaaccggactttcaacttcattacagaaatgttcacttctggaacacttagagagtaaccacatga |
147 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| || || || | |||||||||||||| ||||||||||||| || |||| ||||||| || |||| | |
|
|
| T |
22397308 |
tcatgcaattcaatacctcttggattgatgttaacgacatgaatatcaacttcattacataaatgttcacttccggtgcactcagagagttacaacataa |
22397209 |
T |
|
| Q |
148 |
acataatc------tctatttcactttcttttgactagttttgtgtttaatcagtaattgataagttttcggattttg------cagatacaggaagaaa |
235 |
Q |
| |
|
|||| ||| | ||||||||||||||| ||||| ||| |||| ||||| || |||| || ||| || ||||| ||||||||||||||| |
|
|
| T |
22397208 |
acatgatcatgatatttatttcactttcttt--actagctttttgttaaatcaatagttgacgagctttaggcttttgtacagatagatacaggaagaaa |
22397111 |
T |
|
| Q |
236 |
tataagcatgtagacatgcaagcaataaagagtt |
269 |
Q |
| |
|
||||| ||| ||| |||| ||||||||||||||| |
|
|
| T |
22397110 |
tataatcatataggcatgtaagcaataaagagtt |
22397077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 22397024 - 22396983
Alignment:
| Q |
347 |
gataacatatttgtcaatggccatcttggacaagtgaaaatt |
388 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
22397024 |
gataacacatttgtcaatggacatcttggacacgtgaaaatt |
22396983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 449
Target Start/End: Original strand, 9907865 - 9908003
Alignment:
| Q |
311 |
catgatcctccggtaattcatagagacctcaagtgcgataacatatttgtcaatggccatcttggacaagtgaaaattggtgacctaggtctagcagcga |
410 |
Q |
| |
|
||||||||||| || || ||||||||||| ||||| |||||||| ||||||||||| ||| | || | || || |||||||| |||| || ||||| | |
|
|
| T |
9907865 |
catgatcctcctgtgatacatagagacctaaagtgtgataacatctttgtcaatggtcatatgggtaaggtcaagattggtgatttagggcttgcagcaa |
9907964 |
T |
|
| Q |
411 |
ttcttcgtggttcgcagccggcacacagtgttataggta |
449 |
Q |
| |
|
|||||||||| || || | ||||||||||| ||||||| |
|
|
| T |
9907965 |
ttcttcgtggctcccaacatgcacacagtgtcataggta |
9908003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1163 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1163
Description:
Target: scaffold1163; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 2533 - 2468
Alignment:
| Q |
221 |
agatacaggaagaaatataagcatgtagacatgcaagcaataaagagttgggttcgccaaatctta |
286 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||| |||||||||||| || | ||||||||||||| |
|
|
| T |
2533 |
agatacaggaagaaatataatcatataggcatgtaagcaataaagaattagcctcgccaaatctta |
2468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 27092817 - 27092762
Alignment:
| Q |
315 |
atcctccggtaattcatagagacctcaagtgcgataacatatttgtcaatggccat |
370 |
Q |
| |
|
||||||| || || |||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
27092817 |
atcctcctgtgatacatagagacctcaaatgtgataatatatttgtcaatggccat |
27092762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 27185484 - 27185539
Alignment:
| Q |
315 |
atcctccggtaattcatagagacctcaagtgcgataacatatttgtcaatggccat |
370 |
Q |
| |
|
||||||| || || |||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
27185484 |
atcctcctgtgatacatagagacctcaaatgtgataatatatttgtcaatggccat |
27185539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University