View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20076_high_15 (Length: 467)
Name: NF20076_high_15
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 469439 - 469001
Alignment:
| Q |
19 |
agaagcgattgaatgtaattatatatgtcggtagtaatttgagaaaatggaagttataattagaaacgactgagtgtaatcatatgcgtcacatatcata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
469439 |
agaagcgattgaatgtaattatatatgtccgtagtaatttgagaaaatggaagttatagttagaaacgattgagtgtaatcatatgtgtcacatatcata |
469340 |
T |
|
| Q |
119 |
tggcatgtatgagacatgtcttcaatatgaagtctcaatactacatatcatatgaccannnnnnnnnnnnnnnnnnnnnnnnagctaacaactttatcca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
469339 |
tggcatgtatgagacatgtcttcaatatgaagtctcaatactacatatcatatgaacattttttgattttattttgaattttagctaacaactttatcca |
469240 |
T |
|
| Q |
219 |
ttcacccttcgtagaatgctttagcatttaatcaatcaaatgtatcatagagtaatgacatagaatcataggaacgatctctttaacactctttttgaca |
318 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
469239 |
ttcacccttcgtagaatgctttagcatctaatcaatcaaatgtatcatagagtaatgacataggatcataggaacaatcactttaacactctttttgaca |
469140 |
T |
|
| Q |
319 |
ctcactctattattgagtgaaatcatatcatataggtcctaccatgttatgtgagacaaatttttataattgtgggacccacgtcaataaaagagtgagt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
469139 |
ctcactctattattgagtgaaatcatatcatataggtcctaccatgttatgtgagacaaatttttataattgtgggacccatgtcaataaaagagtgagt |
469040 |
T |
|
| Q |
419 |
gttggaaaaagagtgttaaattgagtgttcttaacttct |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
469039 |
gttggaaaaagagtgttaaattgagtgttcttaacttct |
469001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 15508938 - 15508978
Alignment:
| Q |
303 |
aacactctttttgacactcactctattattgagtgaaatca |
343 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
15508938 |
aacactctttctaacactcactcttttattgagtgaaatca |
15508978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University