View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_20 (Length: 427)
Name: NF20076_high_20
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 44824970 - 44825379
Alignment:
| Q |
16 |
atcgtaaagtgtcaacaagatttcagggttttgttaaatgcataaatgcaaaagaagagatatgggaaaagaaactgacttaggagagcggagccaaaga |
115 |
Q |
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| T |
44824970 |
atcgtaaagtgtcaacaagatttcagggttttgttaaatgcacaaatgaaaaagaagagatatgggaaaagaatctgacttaggagagcagagccaaaga |
44825069 |
T |
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| Q |
116 |
gagacgaacgacaacgacgataaacgacaatgatgggcggagatggtggtgaactgtgaagtgagaagagaagtgagaacgtaataattgtgaatgagag |
215 |
Q |
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| T |
44825070 |
gagacgaacgacaacgacgatagacgacaatgatggacggagatggtggtgaactgtgaagtgagaagagaagtgagaacgtaataattgtgaatgagag |
44825169 |
T |
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| Q |
216 |
tagagttttagtgggcctggagccccctcaccatagcccactgaaaaaattagacggcatagagggcaggacaaatttcagaagaatcagacgacgtcct |
315 |
Q |
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| T |
44825170 |
tagagttttagtaggcctggagccccctcaccatagcccactgaaaaaattagacggtatagagggcaggataaatttcagaagaatcagacgacattct |
44825269 |
T |
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| Q |
316 |
taaattatggcctaaatttaattttatatttgaaaataaatagaattgttaaaggaggatacaaagacatacatatttataacaaacttaatcataatta |
415 |
Q |
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| T |
44825270 |
taaattatggtgtaaatttaattttatatttgaaaataaatagaattgttaaa--aggatacaaagacatacatatttataacaaacttaatcataatta |
44825367 |
T |
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| Q |
416 |
atgaatttaaat |
427 |
Q |
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| T |
44825368 |
atgaatttaaat |
44825379 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 28621822 - 28621868
Alignment:
| Q |
219 |
agttttagtgggcctggagccccctcaccatagcccactgaaaaaat |
265 |
Q |
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| T |
28621822 |
agttttagtggtcctggagccccctcatcatagcccactaaaaaaat |
28621868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 28618562 - 28618517
Alignment:
| Q |
219 |
agttttagtgggcctggagccccc-tcaccatagcccactgaaaaa |
263 |
Q |
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| T |
28618562 |
agttttagtgggtctggagcccccctcaccatagcccactaaaaaa |
28618517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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