View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20076_high_21 (Length: 424)
Name: NF20076_high_21
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_21 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 178 - 424
Target Start/End: Original strand, 29982569 - 29982814
Alignment:
| Q |
178 |
gggtaattacaggttgttatggaaagagaatagagtattggaaagttcttatgatttcattgattgatgaatagagtttacatggtatttatatacataa |
277 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29982569 |
gggtaattacaggttgttatggagagagaatagagtattggaaagtt-ttatgatttcattgattgatgaatagagtttacatggtatttatatacataa |
29982667 |
T |
|
| Q |
278 |
cttagagaacaagtcttcatgtaactaactaacaaacttatccaaatgtaaagctaatcacaacgacctctactaaacttgattatggatcaataacaaa |
377 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
29982668 |
cttagagaacaagtcttcatgtagctaactaacaaacttatccaaatgtaaagctaatcacaactaactctactaaacttgattatggatcaataacaaa |
29982767 |
T |
|
| Q |
378 |
ccaatggttgtttggatattttaaaacgaacgtagtgaaatagtata |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29982768 |
ccaatggttgtttggatattttaaaacgaaggtagtgaaatagtata |
29982814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 191 - 378
Target Start/End: Original strand, 26628618 - 26628804
Alignment:
| Q |
191 |
ttgttatggaaagagaatagagtattggaaagttcttatgatttcattgattgatgaatagagt--ttacatggtatttatatacataacttagagaaca |
288 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| ||||| |||||||||| || ||| ||| ||||| |||||||||||||||||||||| || |
|
|
| T |
26628618 |
ttgttatggagagagaagagagtattggaaagttgttatg--ttcattgattaattaattgaggagttacaaaatatttatatacataacttagagtgca |
26628715 |
T |
|
| Q |
289 |
agtcttcatgtaactaactaacaaacttatccaaatgtaaagctaatcacaacgacctctactaaacttgattatggatcaataacaaac |
378 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| || | | ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
26628716 |
agtctt-atgtaactaactaacaaacttatccaaatgtaaagctaaacaaacttaactctactaaacatgattatggattaataacaaac |
26628804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 29982301 - 29982394
Alignment:
| Q |
7 |
caatccatggttgttttcctgcgcactcaggtgagtcaaattaaaaccgatagattaacaaaaaataaagggataagatgtggagtaagtattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
29982301 |
caatccatggttgttttcctgcgcactcacgtgagtcaaattaaaaccgatagactaacaaaaaataaagggctaagatgtggagtaaatattt |
29982394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 31684096 - 31684020
Alignment:
| Q |
263 |
tatttatatacataacttagagaacaagtcttcatgtaactaactaacaaacttatccaaatgtaaagctaatcacaa |
340 |
Q |
| |
|
||||||||||||| |||||||| |||||| | |||||| |||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
31684096 |
tatttatatacatgacttagagtgcaagtca-cttgtaacaaactaacaaacttatccaaaactaaagttaaacacaa |
31684020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 378
Target Start/End: Complemental strand, 41481347 - 41481156
Alignment:
| Q |
188 |
aggttgttatggaaagagaatagagtattggaaagttcttatgatttcattgattgat-gaatagagt--ttacatggtatttatatacataacttagag |
284 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||| ||| ||| ||| |||||| |||||||| |||||| ||||||||||| || |||||||| |
|
|
| T |
41481347 |
aggttgttagggagagagaataaagtattggaaagttgtta--attctatttattgattgaatagagaggttacatagtatttatatatatgacttagag |
41481250 |
T |
|
| Q |
285 |
aacaagtcttcatgtaactaactaacaaacttatccaaatgt-aaagctaatcacaacgacctctactaaacttgattatggatcaataacaaac |
378 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| | ||||||||| ||||| |||| |
|
|
| T |
41481249 |
aacaagtctt-atgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactctactaaacattattatggattaataagaaac |
41481156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 188 - 378
Target Start/End: Original strand, 41645373 - 41645563
Alignment:
| Q |
188 |
aggttgttatggaaagagaatagagtattggaaagttcttatgatttcattgattgatgaatagagt--ttacatggtatttatatacataacttagaga |
285 |
Q |
| |
|
||||||||| ||| ||| |||||||||||| |||||| ||||| |||||| ||| ||||||| || ||||| ||||||||||||| |||||||| |
|
|
| T |
41645373 |
aggttgttagggagagataatagagtattgaaaagttattatg--ttcattaattaatgaataaagaagttacaaaatatttatatacatgacttagagt |
41645470 |
T |
|
| Q |
286 |
acaagtcttcatgtaactaactaacaaacttatccaaa-tgtaaagctaatcacaacgacctctactaaacttgattatggatcaataacaaac |
378 |
Q |
| |
|
| ||||| | ||||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||| || |||||||| |||||||||| |
|
|
| T |
41645471 |
gcgagtct-cttgtaactaactaacaaacttatccaaattgtaaagctaaacacacttaactctactaaacatggttatggattaataacaaac |
41645563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 202 - 378
Target Start/End: Original strand, 12103392 - 12103570
Alignment:
| Q |
202 |
agagaatagagtattggaaagttcttatgatttcattgattgatgaatagagtt--tacatggtatttatatacataacttagagaacaagtcttcatgt |
299 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||| |||||||| |||| |||||||||||||||||||||||| ||| |||| |||| |
|
|
| T |
12103392 |
agagaatagagtattggaaagttgttattgtttcattgattgacgaatagagaaactacaaagtatttatatacataacttagagagcaaatctt-atgt |
12103490 |
T |
|
| Q |
300 |
aactaactaacaaacttatccaaatgtaaagctaatcacaacgacctctactaaacttgatta-tggatcaataacaaac |
378 |
Q |
| |
|
||||||||||| |||||||||| ||||||| ||| || || | ||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
12103491 |
aactaactaacggacttatccaattgtaaagttaaacaaaattaactctactaaacatgattattggattaataacaaac |
12103570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 3788731 - 3788788
Alignment:
| Q |
321 |
aaatgtaaagctaatcacaacgacctctactaaacttgattatggatcaataacaaac |
378 |
Q |
| |
|
||||||| || |||||||||| | ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
3788731 |
aaatgtatagttaatcacaactaactctactaaacatgattatggattaataacaaac |
3788788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 281 - 378
Target Start/End: Original strand, 10878995 - 10879097
Alignment:
| Q |
281 |
agagaacaagtcttcatgtaac----taactaacaaacttatccaaatgtaaagctaatcacaacgacctctactaaac-ttgattatggatcaataaca |
375 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||| ||||||| |
|
|
| T |
10878995 |
agagaacaggtcttcatgtaactaactaactaacaaacttatccaaatgtaaagctaatcacaactaactctgctaaacaatgattatggattaataaca |
10879094 |
T |
|
| Q |
376 |
aac |
378 |
Q |
| |
|
||| |
|
|
| T |
10879095 |
aac |
10879097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 10878503 - 10878604
Alignment:
| Q |
180 |
gtaattacaggttgttatggaaagagaatagagtattggaaagttcttatgatttcattgattgatgaatagag--tttacatggtatttatatacataa |
277 |
Q |
| |
|
||||||| |||||||||| || |||||| | |||||||||||||| |||| |||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
10878503 |
gtaattagaggttgttatagagagagaaga-agtattggaaagttgttat--tttcattgattgatgaatagagagtttacatagtatttatatacataa |
10878599 |
T |
|
| Q |
278 |
cttag |
282 |
Q |
| |
|
||||| |
|
|
| T |
10878600 |
cttag |
10878604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 42105166 - 42105229
Alignment:
| Q |
7 |
caatccatggttgttttcctgcgcactcaggtgagtcaaattaaaaccgatagattaacaaaaa |
70 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
42105166 |
caatccatggttgttttcctgttcactcgcttgagtcaaattaaaaccgttagattaacaaaaa |
42105229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 19796097 - 19796178
Alignment:
| Q |
295 |
catgtaactaactaacaaacttatccaaatgtaaagctaatcacaacgacctctactaaacttgattatggatcaataacaa |
376 |
Q |
| |
|
|||||||||||||| |||||||| ||| | ||||||||||||| ||| | |||||||| |||||||||||||| ||| |||| |
|
|
| T |
19796097 |
catgtaactaactaccaaacttaaccacaagtaaagctaatcaaaactaactctactagacttgattatggattaatcacaa |
19796178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 19789905 - 19790005
Alignment:
| Q |
237 |
ttgattgatgaatagagtttacatggtatttatatacataacttagagaacaagtcttcatgtaactaactaacaaacttatccaaatgtaaagctaatc |
336 |
Q |
| |
|
|||||| ||||| |||||| ||| | ||||||||||||| |||| | | ||||| ||||||||||| ||||||||||| ||| | |||||||||||| |
|
|
| T |
19789905 |
ttgatttatgaaaagagttaacaagttatttatatacatgacttgcaaagtaagtcaccatgtaactaattaacaaacttaaccacaagtaaagctaatc |
19790004 |
T |
|
| Q |
337 |
a |
337 |
Q |
| |
|
| |
|
|
| T |
19790005 |
a |
19790005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 1418575 - 1418435
Alignment:
| Q |
236 |
attgattgatgaatagagtttacatggtatttatatacataacttagagaacaagtcttcatgtaactaa-ctaacaaacttatccaaatgtaaagctaa |
334 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||| || |||| |||| ||||| |||||||| || |||||||||||| ||| | ||||| |||| |
|
|
| T |
1418575 |
attgatagatgaaaagagtttacaacttatttatatagatgacttggagagtaagtcaccatgtaacaaaactaacaaactta-ccacaagtaaaactaa |
1418477 |
T |
|
| Q |
335 |
tcacaacgacctctactaaacttgattatggatcaataacaa |
376 |
Q |
| |
|
||| ||| | ||||||||||||||||||||||| ||| |||| |
|
|
| T |
1418476 |
tcaaaactaactctactaaacttgattatggattaatcacaa |
1418435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 11749675 - 11749751
Alignment:
| Q |
263 |
tatttatatacataacttagagaacaagtcttcatgtaactaactaacaaacttatccaaatgtaaagctaatcacaa |
340 |
Q |
| |
|
||||||||||||| |||||||| |||||| | |||||| |||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
11749675 |
tatttatatacatgacttagagtgcaagtca-cttgtaacaaactaacaaacttatccaaaattaaagataaacacaa |
11749751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 36948733 - 36948695
Alignment:
| Q |
297 |
tgtaactaactaacaaacttatccaaat-gtaaagctaa |
334 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36948733 |
tgtaactaactaacaaacttatccaaatggtaaagctaa |
36948695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University