View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_30 (Length: 357)
Name: NF20076_high_30
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 38 - 317
Target Start/End: Original strand, 573244 - 573537
Alignment:
| Q |
38 |
tgagacaacccatgaaagaaatttcatatttaaacatacaaaaactaaagacttggaacataaa-gagagaagcaaccccatggttgtaaattttcataa |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
573244 |
tgagacaacccatgaaagaaatttcatatttaaacatacaaaaactaaagacttggaacataaaagaaagaagcaaccccatggttgtaaattttcataa |
573343 |
T |
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| Q |
137 |
agcaacaccgaagcaaaattctactttccaagcaatgaaccaaaaacatttcaagtcgaatgtgtgtgtactacgatgcatgatttcattcaattatctt |
236 |
Q |
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| T |
573344 |
aacaacaccgaagcaaaattctactttccaagcaatgaaccaaaaacatttcaagtcgaatgtgtgtgtactgcgatgcatgatttcattcaattatctt |
573443 |
T |
|
| Q |
237 |
attttcttaaataattttc-------------agtgtcagacatatcaatgcttcggtgtatatgtttatgcttcatagattgcgagtagaagt |
317 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
573444 |
attttctcaaataattttcagtgtcaatatcaagtgtcagacatatcaatgcttcggtgtatatgtttatgcttcatagattgcgagtagaagt |
573537 |
T |
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