View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_31 (Length: 357)
Name: NF20076_high_31
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_31 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 42635347 - 42635703
Alignment:
| Q |
1 |
caaaggcctcaatatgagaaatcgagttcgtcaaataggtactcactaaatggacacgacatggcaagattggctgcacagagaacatctgcattgcaag |
100 |
Q |
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| T |
42635347 |
caaaggcctcaatatgagaaatcaagttcgtcaaataggtactcactaaatggacacgacatggcaagattggccgcacagagaacatctgcattgcaag |
42635446 |
T |
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| Q |
101 |
caagcttcactagcaaaggctatcctggttctggtcgtttggataaacttggaatgcctgtagggtatagatattgatgataatgataatgttaatttct |
200 |
Q |
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| T |
42635447 |
caagcttcactagcaaaggctatcctggttctggtcgtttggataagcttggaatgcctgtagggtatagatattgatgataatgataatgttaatttct |
42635546 |
T |
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| Q |
201 |
gttaaaagggtattactagtttattattgtagctttatttgagtgttgttgaagccttaacatttatcttgctaactaactgattgtactttgttgggtt |
300 |
Q |
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| T |
42635547 |
gttaaaagggtattactagtttattattgtagctttatttgagtgttgttgaagccttaacatttatcttgctaactaactgattgtactttgttgggtt |
42635646 |
T |
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| Q |
301 |
gtgaaacttcatctttgtggcagcattagaatattcttaactatattatactatata |
357 |
Q |
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| T |
42635647 |
gtgaaacttcatctttatggcagcattagaatattcttaactatattatactatata |
42635703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 44096218 - 44095910
Alignment:
| Q |
1 |
caaaggcctcaatatgagaaatcgagttcgtcaaataggtactcactaaatggacacgacatggcaagattggctgcacagagaacatctgcattgcaag |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
44096218 |
caaaggcctcaatatgagaaatcgggttcgtcaaataggtactcactcaatggacacgacatggcaagattggccgcacagagaacatctacattgcaag |
44096119 |
T |
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| Q |
101 |
caagcttcactagcaaaggctatcctggttctggtcgtttggataaacttggaatgcctgtagggtatagatattgatgataatgataatgttaatttct |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| | |
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| T |
44096118 |
caagcttcactagcaaagtctatcctggttctggtcgtttggataagcttggaattcctgtagggtatagatattgatgat------aatgttaatttat |
44096025 |
T |
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| Q |
201 |
gttaaaagggtattactagtttattattgtagctttatttgagtgttgttgaagccttaacatttatcttgctaactaactgattgtactttgttgggtt |
300 |
Q |
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||| |||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
44096024 |
gtttaaagggta----tag-atatttttgtagctttatttgagtgttgttgaagtcttaacatttatcttgctaactaactcgttgtactttgttgtgtt |
44095930 |
T |
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| Q |
301 |
gtgaaacttcatctttgtgg |
320 |
Q |
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|||||||||||||||||||| |
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| T |
44095929 |
gtgaaacttcatctttgtgg |
44095910 |
T |
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