View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_40 (Length: 332)
Name: NF20076_high_40
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 750035 - 749772
Alignment:
| Q |
18 |
taaatatcttactaaactgtttttggtttaatttatcacaggctgtgccagttttcctttcagaaattgcaccttcaagaattcgtggagctttgaatat |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
750035 |
taaatatcttacgaaactgtttttggtttaatttatcacaggctgtgccagttttcctttcagaaattgcaccttcaagaattcgtggagctttgaatat |
749936 |
T |
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| Q |
118 |
actgttccagctcaatgtcaccattggaattttgtttgctaaccttgtcaattacggcactaacaagtaagcatctttcttggaaattaaaactacaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
749935 |
actgttccagctcaatgtcaccattggaattttgtttgctaaccttgtcaattacggcactaacaagtaagcatctttcttggaaattaaaactacaaac |
749836 |
T |
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| Q |
218 |
acaattgatgagtaatattaaatcacaaatcatattcagaacagtagttaagtgttaacatcat |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
749835 |
acaattgatgagtaatattaaatcacaaatcatattcagaacagtagttaagtgttaacgtcat |
749772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 47211158 - 47211291
Alignment:
| Q |
55 |
acaggctgtgccagttttcctttcagaaattgcaccttcaagaattcgtggagctttgaatatactgttccagctcaatgtcaccattggaattttgttt |
154 |
Q |
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|||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| ||||| || |||| |||| ||| | ||| |
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| T |
47211158 |
acaggccgtgccagttttcctttcagagattgcaccttctagaatacgtggagcattgaatatactgtttcagcttgatatcactcttggcattctcttt |
47211257 |
T |
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| Q |
155 |
gctaaccttgtcaattacggcactaacaagtaag |
188 |
Q |
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| T |
47211258 |
gctaaccttgtcaattatgccaccaacaagtaag |
47211291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 47184690 - 47184743
Alignment:
| Q |
55 |
acaggctgtgccagttttcctttcagaaattgcaccttcaagaattcgtggagc |
108 |
Q |
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|||||||||||||||||| || || ||||| ||||| |||||||||||||||| |
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| T |
47184690 |
acaggctgtgccagtttttctatctgaaatagcaccaacaagaattcgtggagc |
47184743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 47197569 - 47197622
Alignment:
| Q |
55 |
acaggctgtgccagttttcctttcagaaattgcaccttcaagaattcgtggagc |
108 |
Q |
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|||||||||||||||||| || || ||||| ||||| |||||||||||||||| |
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| T |
47197569 |
acaggctgtgccagtttttctatctgaaatagcaccaacaagaattcgtggagc |
47197622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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