View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_41 (Length: 323)
Name: NF20076_high_41
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_41 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 54904968 - 54905272
Alignment:
| Q |
19 |
attgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaactcatgatcccaaactaaacgaagcttcttttgagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
54904968 |
attgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaactcatgatcccaaactaaacgaggcttctttcgagt |
54905067 |
T |
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| Q |
119 |
cgaacatttctcatcagtatcttgttctgcttcttcctcctcagtttgttcctttctttttcgtccatgcattttattcttgttagcaatattttcagat |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54905068 |
cgaacatttctcatcattatcttgttctgcttcttcctcctcagtttgttcctttctttttcgtccatgcattttattcttgttagcaatattttcagat |
54905167 |
T |
|
| Q |
219 |
gaggtgtcttgaccatataccccatcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgccatatgctcttaagct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54905168 |
gaggtgtcttgaccatataccccatcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgccatatgctcttaagct |
54905267 |
T |
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| Q |
319 |
cttcc |
323 |
Q |
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||||| |
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| T |
54905268 |
cttcc |
54905272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 54894524 - 54894830
Alignment:
| Q |
19 |
attgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaactcatgatcccaaactaaacgaagcttcttttgagt |
118 |
Q |
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||||||| |||||||||||||||||||| | |||||||| ||||||||||||| ||||||||| | ||||||||| ||||| ||||||| |||| |
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| T |
54894524 |
attgtcatataaactcactgtcaaggccaagcagattaactatagaaacaaattttttatgcaactcgttatcccaaacaaaacgcggcttcttccgagt |
54894623 |
T |
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| Q |
119 |
cgaacatttctcatcagtatctt-----gt-tctgcttcttcctcctcagtttgttcctttctttttcgtccatgcattttattcttgttagcaatattt |
212 |
Q |
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|| || ||| ||| | |||| || |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||| |
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| T |
54894624 |
tgagtgttcctcgtcattctcttcatcagtatctgcttcttcctcctcactttgttcctttctttttcgtccatgcgttttattcttcttaggaatattt |
54894723 |
T |
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| Q |
213 |
tcagatgaggtgtcttgaccatataccccatcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgccatatgctct |
312 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |
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| T |
54894724 |
tcagatgaggtgtcttgaccagataccccatcactaatgataccttgattttgatccttgctttcaatcttttttctcactacatgttgccatatgttct |
54894823 |
T |
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| Q |
313 |
taagctc |
319 |
Q |
| |
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||||||| |
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| T |
54894824 |
taagctc |
54894830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 54888903 - 54889222
Alignment:
| Q |
19 |
attgtcacataaactcactgtcaaggccgacatgattaactgcagaaacaaattttcgatgcaactcatgatcccaaactaaacgaagcttcttttgagt |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| ||||| ||| ||||||||| ||||| |||| |||||||||||||||| ||||||| |||| |
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| T |
54888903 |
attgtcacataaactcactatcaaggccgagttgactaactatagatacaaattttttatgcagttcatcatcccaaactaaacgaggcttcttccgagt |
54889002 |
T |
|
| Q |
119 |
cgaacatttctcatcagtatcttgttctgcttcttcctcctc---------------agtttgttcctttctttttcgtccatgcattttattcttgtta |
203 |
Q |
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||| | || ||||||| |||||| |||||||||||| || || | ||||||||||| ||||| ||||| | |||||||| ||||| |
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| T |
54889003 |
cgagcgttcctcatcattatcttcttctgcttcttcttcttcctcttcttcatcttcactttgttcctttattttttgtccacgggttttattcctgtta |
54889102 |
T |
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| Q |
204 |
gcaatattttcagatgaggtgtcttgaccatataccccatcactaatgataccttgattttgatccttgctttcaatcttctttctaactacatgttgcc |
303 |
Q |
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|||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
54889103 |
gcaatattttcagatgaggtgtcttgactacatatcccatcagtaatgatacctttattccgatccttgctttcaatcttctttctcactacatgttgcc |
54889202 |
T |
|
| Q |
304 |
atatgctcttaagctcttcc |
323 |
Q |
| |
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||||| |||||||||||||| |
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| T |
54889203 |
atatgttcttaagctcttcc |
54889222 |
T |
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