View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20076_high_44 (Length: 317)
Name: NF20076_high_44
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 26354654 - 26354356
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtatttta |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354654 |
ccttgaaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtatttta |
26354555 |
T |
|
| Q |
101 |
tccaaatgatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgac |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354554 |
tccaaatgatgcaatttcggtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgac |
26354455 |
T |
|
| Q |
201 |
tctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcatt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
26354454 |
tctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagatttaatgagactaaattcatt |
26354356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 9815425 - 9815715
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtatttta |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| ||| | || ||||| ||||| |
|
|
| T |
9815425 |
ccttgaaaattgacaatgttaagctggcattagactcggctatggatgattttctttggcgtccatattttagatatgctgataactgcggtgtgtttta |
9815524 |
T |
|
| Q |
101 |
tccaaatgatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgac |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||||||||| ||| |
|
|
| T |
9815525 |
tccaaatgatgcgcttttggtaccatttaagaaagatttggataagctaatgctctcatttgttatatgcttgagagtttccgagcttgttggattcgac |
9815624 |
T |
|
| Q |
201 |
tctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9815625 |
tctatagagcagtatttgccacatagagttgctatgcaatttgaaatggatcaagatgttccaacttatgtgcctagattcaatgagacta |
9815715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 158 - 291
Target Start/End: Complemental strand, 38435159 - 38435026
Alignment:
| Q |
158 |
atttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagat |
257 |
Q |
| |
|
|||||||| |||| |||||||||| |||| |||||||||||||||| || || ||| | |||||||||| ||||||| ||||| |||| ||||||||| |
|
|
| T |
38435159 |
atttgttacatgcttgagagtttcctagctaattggatttgactctattgaacaatatctaccacatagagatgctatgtaatttagaattgatcaagat |
38435060 |
T |
|
| Q |
258 |
gttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||| |
|
|
| T |
38435059 |
gttccaagttatgtgcttaggttaaatgagacta |
38435026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 20015922 - 20015638
Alignment:
| Q |
7 |
aaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaa |
106 |
Q |
| |
|
||||||||||||||| | ||| |||||||| ||||| ||||||||||||||||||||||||| |||||||| ||| | |||| | | ||||||||||| |
|
|
| T |
20015922 |
aaattgacaatgttatggtggcattagactcagctattgatgattttctttggcgtccatatttcagatatgctgataagtgtgatttgttttatccaaa |
20015823 |
T |
|
| Q |
107 |
tgatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctata |
206 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
20015822 |
tgatgcattttttgtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcttaagagtttccgagcttgttggatttgactctata |
20015723 |
T |
|
| Q |
207 |
gagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
20015722 |
gagcagtatttgccacacagagttgctatgcaatttggaatggatcaagatgttccaggtgatgtgcctagattcaatgagacta |
20015638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 46 - 291
Target Start/End: Original strand, 26647437 - 26647685
Alignment:
| Q |
46 |
atgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatgatgcaatttcagtaccatttaagaaagatttgg---a |
142 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||| | |||| | |||||||||||||||| |||||| |||||||||||||||||||||| | |
|
|
| T |
26647437 |
atgattttctttggcgtccttatgttagatatgctgataagtgtgaattgttttatccaaatgatgaaatttcggtaccatttaagaaagatttggttga |
26647536 |
T |
|
| Q |
143 |
taaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaattt |
242 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
26647537 |
tgaacaaatgctctcatttgttatatgcttgagagtttctgagcttgttggattcgactctatagaacagtatctgccacatagagttgctatgcaattt |
26647636 |
T |
|
| Q |
243 |
ggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
26647637 |
ggaatggatcaagatgttccgagtgatgtgcctcgattcaatgagacta |
26647685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 19956484 - 19956765
Alignment:
| Q |
10 |
ttgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatga |
109 |
Q |
| |
|
|||||||||||| | ||| |||||||| |||||| |||| |||||||||||||||||| || ||||| | || ||||||| |||||||||||||||| |
|
|
| T |
19956484 |
ttgacaatgttaggatggcattagactcggctatggatgactttctttggcgtccatatgttcgatattctcataaatgtgggctattttatccaaatga |
19956583 |
T |
|
| Q |
110 |
tgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagag |
209 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||||| | |||| ||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
19956584 |
tgaaattttggtaccatttaagaaggatttggatacaaaaattatctcatttgttatatgcttgagagtttccgagctggttggatttgagtctatagag |
19956683 |
T |
|
| Q |
210 |
cagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
|| ||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
19956684 |
caatatcttccacatagagttgctatgcaatttggaattgatcaagatgttccgggttatgtagctaggttcaatgagacta |
19956765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 19812681 - 19812957
Alignment:
| Q |
8 |
aattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaat |
107 |
Q |
| |
|
|||||||||||||| | | | ||||||| |||| | ||||||||||||||||||||||| |||||||||| ||| | |||| | |||||||||||| |
|
|
| T |
19812681 |
aattgacaatgttaggttagcgttagactcggctgtggatgattttctttggcgtccatatgttagatatgccgataagtgtgcattgttttatccaaat |
19812780 |
T |
|
| Q |
108 |
gatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatag |
207 |
Q |
| |
|
|||| |||||| |||||||| || | |||||| ||||| ||||||||||||||||||||||| ||||| ||||||||| ||||| | |||||||||| |
|
|
| T |
19812781 |
gatgaaatttcggtaccattcaaaatagatttagataacaaaatgctctcatttgttatatgcttgagatgttctgagctagttggtatcgactctatag |
19812880 |
T |
|
| Q |
208 |
agcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaat |
284 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19812881 |
agcaatatcttccacatagagttgctatgcaatttggaattgatcaagatgttccaagttatgtgcctaggttcaat |
19812957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 19818951 - 19819241
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtatttta |
100 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||| ||||| |||| |||||||||||||||||| || ||||| | ||| | |||| | ||||| |
|
|
| T |
19818951 |
ccttggaaattgacaatgttaggatggcattagactcggctaaggatgactttctttggcgtccatatgttcgatattctgataagtgtgagctgtttta |
19819050 |
T |
|
| Q |
101 |
tccaaatgatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgac |
200 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||| |||||||||| | |||| ||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
19819051 |
tccgaatgatggaattttggtaccatttaagatggatttggatacaaaaattctctcatttgttatatgtttgagagtttctgagcttgttggttttgag |
19819150 |
T |
|
| Q |
201 |
tctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
|| |||||||| ||| | |||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
19819151 |
tccatagagcaatatcttccacatagagttgctatgcagtttggaattgatcaagatgttcctggttatgtggctaggttcaatgagacta |
19819241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 46 - 291
Target Start/End: Original strand, 26653584 - 26653829
Alignment:
| Q |
46 |
atgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatgatgcaatttcagtaccatttaagaaagatttggataa |
145 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | | | ||||| | |||||||||||| ||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
26653584 |
atgattttctttggcgtccatatgttagatatcctaacaagtgtggaatgttttatccaaataatgaaatttgggtaccatttaagaaggatttggatac |
26653683 |
T |
|
| Q |
146 |
acaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttgga |
245 |
Q |
| |
|
| | ||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
26653684 |
aaacatgctctcatttgttatatgcttgagagttgctgagctagttggatttgagtctattgagcaatatcttccacatagagttgctatgcaatttgga |
26653783 |
T |
|
| Q |
246 |
atggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
|| || ||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
26653784 |
attgaccaagatgttccaagttatgtggctaggttcaatgagacta |
26653829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 19838791 - 19839074
Alignment:
| Q |
8 |
aattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaat |
107 |
Q |
| |
|
|||||||||| ||| | ||| ||||||| |||||| |||| |||||||||||||||||| || ||||| | ||| | |||| | |||||||||||| |
|
|
| T |
19838791 |
aattgacaatattaggatggctttagactcggctatggatgactttctttggcgtccatatgttcgatattctgataagtgtgaactgttttatccaaat |
19838890 |
T |
|
| Q |
108 |
gatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatag |
207 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||| |||| | |||| ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
19838891 |
gatgaaattttggtaccatttaagagggatttagatacaaaaattatctcatttgttatatgccttagagtttccgagcttgttggatttgagtctatag |
19838990 |
T |
|
| Q |
208 |
agcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||||| ||||| |
|
|
| T |
19838991 |
agcaatatcttccacatagagttgctatgcaattcggaatggatcaagatgttccaggttatgtggctaggttcaatgtgacta |
19839074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 20046517 - 20046784
Alignment:
| Q |
7 |
aaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaa |
106 |
Q |
| |
|
||||||| ||||||||| ||| |||||||| || || ||||||||||||||||||||||| |||||||| | || | ||||| | ||||||||||| |
|
|
| T |
20046517 |
aaattgataatgttaagttggcattagactcaactgtcgatgattttctttggcgtccatatgttagatatcctgacaagtgtggaattttttatccaaa |
20046616 |
T |
|
| Q |
107 |
tgatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctata |
206 |
Q |
| |
|
| | | ||||| |||||||||||||| |||||||||||| |||| || |||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20046617 |
taacgaaatttgggtaccatttaagaaggatttggataaaaaaatactttcattttctatatgcctgagagtttctgagcttgttggatttgagtctata |
20046716 |
T |
|
| Q |
207 |
gagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcc |
274 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||| | || ||||||||||| ||||||||||| |
|
|
| T |
20046717 |
gagcagtatcttccacatagagtttctatgcaatttggacttgaccaagatgttccgagttatgtgcc |
20046784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 19832260 - 19832551
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtatttta |
100 |
Q |
| |
|
|||||| |||||||||||||| | ||| |||||||||||||| |||| |||||||||||||||||| || ||||| | ||| | |||| | ||||| |
|
|
| T |
19832260 |
ccttggtaattgacaatgttaggatggcattagacttggctaaggatgactttctttggcgtccatatgttcgatattctgataagtgtgagctgtttta |
19832359 |
T |
|
| Q |
101 |
tccaaatgatgcaatttcagtaccatttaagaaagatttggata-aacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttga |
199 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||| |||||||||| || |||| ||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
19832360 |
tccgaatgatggaattttggtaccatttaagatggatttggatacaaaaaattctctcatttgttatatgtttgagagtttctgagcttgttggttttga |
19832459 |
T |
|
| Q |
200 |
ctctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
|| |||||||| ||| | |||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
19832460 |
gtccatagagcaatatcttccacatagagttgctatgcagattggaattgatcaagatgttcctggttatgtggctaggttcaatgagacta |
19832551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 19858460 - 19858748
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtatttta |
100 |
Q |
| |
|
||||| || |||||||||||||| ||| |||||||| |||||| |||||||| |||||||||| || |||||||||||||| | ||||| | ||||| |
|
|
| T |
19858460 |
ccttgaaagttgacaatgttaagttggcattagactcggctattgatgattttatttggcgtccttacgttagatatgcagataagtgtggactgtttta |
19858559 |
T |
|
| Q |
101 |
tccaaatgatgcaatttcagtaccatttaagaaagatttgg---ataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggattt |
197 |
Q |
| |
|
||||||||| | ||||| ||| ||| | |||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
19858560 |
tccaaatgacgaaatttgggtatcatattagaaagatttggtcgataaacaaatgctctcatttattatatgtttgagagtttctgagctagttgggttt |
19858659 |
T |
|
| Q |
198 |
gactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatga |
286 |
Q |
| |
|
|| | ||||||||| ||| | ||||||||||||||||||||||||| | | |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
19858660 |
gagtttatagagcaatatctaccacatagagttgctatgcaatttgaatttgatcaagatgttcctggttatgtgtctagattcaatga |
19858748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 291
Target Start/End: Complemental strand, 20033969 - 20033771
Alignment:
| Q |
96 |
ttttatccaaatgatgcaatttcagtaccatttaagaaagatttgg---ataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttg |
192 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
20033969 |
ttttatccgaatgatgaaatttcagtaccatttaagaatgatttggtggatcaacaaatgctgtcatttgttatatgcatgagagtgtctgagcaagttg |
20033870 |
T |
|
| Q |
193 |
gatttgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
| | |||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
20033869 |
gtatcgactctatagagcaatatcttccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctaggttcaacgagacta |
20033771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 47 - 284
Target Start/End: Original strand, 19951558 - 19951798
Alignment:
| Q |
47 |
tgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatgatgcaatttcagtaccatttaagaaagatttgg---at |
143 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| ||| | ||||| | |||||||| ||||| | ||||| || ||||||||||||||||||| || |
|
|
| T |
19951558 |
tgattttatttggcgtccatatgttagatatgctgataagtgtggaatgttttatccgaatgaagaaattttggtgccatttaagaaagatttggtggat |
19951657 |
T |
|
| Q |
144 |
aaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttg |
243 |
Q |
| |
|
|||||||| | ||||||||||||||| |||||||||||||||| ||||| | |||||||||||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
19951658 |
caacaaatgttgtcatttgttatatgcttgagagtttctgagctagttggtatcgactctatagagcaatatcttccacatagagttgctatgcaatttg |
19951757 |
T |
|
| Q |
244 |
gaatggatcaagatgttccaagttatgtgcctagattcaat |
284 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
19951758 |
caatggatcaagatgttccgagttatgtgcctaggttcaat |
19951798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 24839704 - 24839411
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtatttta |
100 |
Q |
| |
|
||||| ||||||||||||| | | ||| |||||||| | ||| |||||||| |||||||||| ||| || ||||| ||| | ||||| || ||||| |
|
|
| T |
24839704 |
ccttgaaaattgacaatgtgaggttggcattagactcagtcatcgatgattttatttggcgtccttatgttcaatatgttgataagtgtggagtgtttta |
24839605 |
T |
|
| Q |
101 |
tccaaatgatgcaatttcagtaccatttaagaaagatttgga--ta-aacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggattt |
197 |
Q |
| |
|
|||||| |||| || || |||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
24839604 |
tccaaaggatgaaactttggtaccatttaagaaagatttggtagtagaacaaatgctctcatttgttatattcttgagagtttctgagctagttggattt |
24839505 |
T |
|
| Q |
198 |
gactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
|| |||||||| || ||| | ||||||||||||||||||||||| ||| | |||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
24839504 |
gagtctatagaacaatatctaccacatagagttgctatgcaattcggatttgatcaagatgttcctggttatgtgtctagactcaatgagacta |
24839411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 20036322 - 20036054
Alignment:
| Q |
9 |
attgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatg |
108 |
Q |
| |
|
||||||||||||| | ||| |||||||| |||||| |||| |||||||||||||||||| || ||||| | ||| | | || | |||||||||||| |
|
|
| T |
20036322 |
attgacaatgttaggatggcattagactcggctatggatgactttctttggcgtccatatgttcgatattctgataagtttgaactgctttatccaaatg |
20036223 |
T |
|
| Q |
109 |
atgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctataga |
208 |
Q |
| |
|
||| || || |||||||||| ||| ||||||||| | |||| ||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
20036222 |
atgaaactttggtaccatttacgaagtatttggatacaaaaattatctcatttgttatatgcttgagggtttctgagctggttggatttgagtctataga |
20036123 |
T |
|
| Q |
209 |
gcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctag |
277 |
Q |
| |
|
||| ||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||| |
|
|
| T |
20036122 |
gcaatatcttccacatagagttgctatgcaatttggaattgatcaagatgttccgagttacgtggctag |
20036054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 19849387 - 19849677
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtatttta |
100 |
Q |
| |
|
||||| ||||||||||||||| | ||| |||||||| |||||| ||||||||||||||||||||||| ||||||||| || | | ||| | ||||| |
|
|
| T |
19849387 |
ccttgaaaattgacaatgttaggttggcattagactcggctatggatgattttctttggcgtccatatgctagatatgctcataattatggaatgtttta |
19849486 |
T |
|
| Q |
101 |
tccaaatgatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgac |
200 |
Q |
| |
|
||||||||||| ||||| || ||| ||||||||| |||||| |||| || |||||||||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
19849487 |
tccaaatgatggaatttgggtgttgtttgagaaagattcagataaagaaatactttcatttgttacatgtttgagagtttctgagctcattggatttgag |
19849586 |
T |
|
| Q |
201 |
tctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || ||||||| |||||||||||||||||||||||||||||||| || || ||||| |||| |
|
|
| T |
19849587 |
tctatagagcaatatctcccacatagagtctctttgcaattcggaatggatcaagatgttccaagttatgtgccgaggttaaatgatacta |
19849677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 17115110 - 17115311
Alignment:
| Q |
7 |
aaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaa |
106 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||| || |||||||||||||||||||||| |||||||||| ||| | ||||| | ||||||||||| |
|
|
| T |
17115110 |
aaattgacaatgttaagctagcattagacttagctgtcgatgattttctttggcgtccatacattagatatgctgataagtgtggaatgttttatccaaa |
17115209 |
T |
|
| Q |
107 |
tgatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctata |
206 |
Q |
| |
|
||||| ||||| |||||||| || ||||||||||||||| ||||| | |||||||||||||| | |||||||| ||||||||||| |||||| ||||| |
|
|
| T |
17115210 |
tgatgaaattttggtaccattcaaaaaagatttggataaaaaaatgttgtcatttgttatatgtttcagagtttccgagcttgttgggtttgacactata |
17115309 |
T |
|
| Q |
207 |
ga |
208 |
Q |
| |
|
|| |
|
|
| T |
17115310 |
ga |
17115311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 19944105 - 19944369
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtatttta |
100 |
Q |
| |
|
||||| ||||||||||||| | ||| |||||| | ||||||||||||||| |||| ||||| ||| || |||||| ||| | ||||| |||| ||| |
|
|
| T |
19944105 |
ccttgaaaattgacaatgtggggttggcattagattcagctatcaatgattttatttgccgtccttatgttcaatatgctgataagtgtggagtatatta |
19944204 |
T |
|
| Q |
101 |
tccaaatgatgcaatttcagtaccatttaagaaagatttgga--ta-aacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggattt |
197 |
Q |
| |
|
||||||||||| || || ||||||||||| |||||||||| || |||||||||||||||||||||||| | |||||||||| ||||| ||||||||| |
|
|
| T |
19944205 |
tccaaatgatgaaactttggtaccatttaaaaaagatttggtagtagaacaaatgctctcatttgttatattcttgagagtttccgagctagttggattt |
19944304 |
T |
|
| Q |
198 |
gactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttcc |
262 |
Q |
| |
|
|| |||||||| || ||| | ||| ||||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
19944305 |
gagtctatagaacaatatctaccatatagagttgctatgcaattcggatttgatcaagatgttcc |
19944369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 19989928 - 19990205
Alignment:
| Q |
10 |
ttgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatga |
109 |
Q |
| |
|
|||||||||||| | |||||||| ||| || | ||| |||||||||||||||||||| |||||| ||| || | |||| | |||||||||||||| |
|
|
| T |
19989928 |
ttgacaatgttaggttggaattaaactcagcaaagaatcattttctttggcgtccatatgttagatttgctgagaagtgtgaactgttttatccaaatga |
19990027 |
T |
|
| Q |
110 |
tgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagag |
209 |
Q |
| |
|
|| || || ||| ||||||| ||||||||| | |||||| |||||||||| ||| ||||||||||||||||||||||| |||||| | ||| |
|
|
| T |
19990028 |
tggaacttgggta---tttaagactgatttggatgacacaatgctgtcatttgttagatgtatgagagtttctgagcttgttggaattgactttgtagtt |
19990124 |
T |
|
| Q |
210 |
cagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagact |
290 |
Q |
| |
|
|| ||| | ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
19990125 |
caatatctcccacatagagttgctttgcaatttggaatggatcaagatattccaagttacgtgcctaggttcaatgagact |
19990205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 46 - 290
Target Start/End: Original strand, 19853933 - 19854180
Alignment:
| Q |
46 |
atgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatgatgcaatttcagtaccatttaagaaagatttgg---a |
142 |
Q |
| |
|
|||||||| |||||||||| ||| |||| ||||| || | ||||| | ||||| || ||||||| |||| |||||||||||||| ||||||| | |
|
|
| T |
19853933 |
atgattttatttggcgtccttatgttagctatgctcataagtgtggaatgttttacccgaatgatgaaattcgggtaccatttaagaacgatttggtgga |
19854032 |
T |
|
| Q |
143 |
taaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaattt |
242 |
Q |
| |
|
|||||||||||||| |||||| | |||| |||||||||||||||| ||||| ||||| | ||||||||| ||| | |||||||||||||||| ||||||| |
|
|
| T |
19854033 |
taaacaaatgctcttatttgtcacatgcttgagagtttctgagctagttgggtttgagtttatagagcaatatctaccacatagagttgctaggcaattt |
19854132 |
T |
|
| Q |
243 |
ggaatggatcaagatgttccaagttatgtgcctagattcaatgagact |
290 |
Q |
| |
|
||| | |||||||||||||| |||||||| | ||| ||||||||||| |
|
|
| T |
19854133 |
ggatttgatcaagatgttcctggttatgtgtccagactcaatgagact |
19854180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 26652115 - 26652316
Alignment:
| Q |
10 |
ttgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatga |
109 |
Q |
| |
|
|||||||||| | | ||| |||||| | ||||||||||||||| |||||||||| ||| || | ||||||||| | |||| || |||||||||||||| |
|
|
| T |
26652115 |
ttgacaatgtgaggttggcattagattcagctatcaatgattttatttggcgtccttatgttcggtatgcagataagtgtgaagtgttttatccaaatga |
26652214 |
T |
|
| Q |
110 |
tgcaatttcagtaccatttaagaaagatt---tggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctata |
206 |
Q |
| |
|
| || || ||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
26652215 |
cggaactttggtaccatttaagaaagatttggtggatatacaaatgctctcatttgttaaatgctaaagagtttctgagctagttggatttgagtctata |
26652314 |
T |
|
| Q |
207 |
ga |
208 |
Q |
| |
|
|| |
|
|
| T |
26652315 |
ga |
26652316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 29 - 287
Target Start/End: Original strand, 1717636 - 1717897
Alignment:
| Q |
29 |
attagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatgatgcaatttcagtaccattt |
128 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||||| |||||||||| ||| | |||| | ||||||||| |||||| ||||| ||||||||| |
|
|
| T |
1717636 |
attagactcagctattgatgattttatttggcgtccatatgttagatatgctgataagcgtggaatgttttatccatatgatgaaattttggtaccattt |
1717735 |
T |
|
| Q |
129 |
aagaaagatttgg---ataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacata |
225 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1717736 |
aagaaagatttggtggatgaacaaatgctgtcatttgttatatgcttgagagtatctgaacttgttggatttgactctatagagcagtatctgccacata |
1717835 |
T |
|
| Q |
226 |
gagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgag |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1717836 |
gagttgctatgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgag |
1717897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 46 - 272
Target Start/End: Original strand, 38483409 - 38483633
Alignment:
| Q |
46 |
atgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatgatgcaatttcagtaccatttaagaaagatttggataa |
145 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| | |||||| | ||||||| |||||||||| ||| ||||| ||||||||| |||||||||| |
|
|
| T |
38483409 |
atgattttctttagcgtccatattttagatatgatgataagtgtggtttgttttatcaaaatgatgcacttttggtaccgtttaagaaatatttggataa |
38483508 |
T |
|
| Q |
146 |
acaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttgga |
245 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38483509 |
acaaatgctctcatttgttatatgcttgagagtttttgagcttgttagatttgagactatagagcagtatttg--tcatagagttgctatgcaatttggt |
38483606 |
T |
|
| Q |
246 |
atggatcaagatgttccaagttatgtg |
272 |
Q |
| |
|
|||||| |||||||| ||||||||||| |
|
|
| T |
38483607 |
atggattaagatgttacaagttatgtg |
38483633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 49 - 282
Target Start/End: Complemental strand, 22689355 - 22689119
Alignment:
| Q |
49 |
attttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatgatgcaatttcagtaccatttaagaaagattt---ggataa |
145 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| ||| | ||||| || ||||||||||| |||| ||||| || || | | ||||||||| |||||| |
|
|
| T |
22689355 |
attttatttggcgtccttatgttagatatgctgataagtgtggagtgttttatccaaaggatgaaatttgtgtgccgtcgatgaaagatttggcggataa |
22689256 |
T |
|
| Q |
146 |
acaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttgga |
245 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||| | |||||||||||||||| ||| |||||| |
|
|
| T |
22689255 |
acaaatgttgtcatttgttatatgcttgagagtttctgagctagttggatttgagtctatagagcaatatctaccacatagagttgctaggcagtttgga |
22689156 |
T |
|
| Q |
246 |
atggatcaagatgttccaagttatgtgcctagattca |
282 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
22689155 |
atggatcaagatgttcctggttatgtctctagattca |
22689119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 46 - 288
Target Start/End: Original strand, 11544506 - 11544748
Alignment:
| Q |
46 |
atgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatgatgcaatttcagtaccatttaagaaagatttggataa |
145 |
Q |
| |
|
|||||||||||||||| |||||| || |||||| ||| | | || | |||||||||||||||| || || ||||| ||||||| ||||||||||| |
|
|
| T |
11544506 |
atgattttctttggcgcccatatgttcaatatgccgataagtttgaaatgttttatccaaatgatgaaactttggtaccgcttaagaaggatttggataa |
11544605 |
T |
|
| Q |
146 |
acaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttgga |
245 |
Q |
| |
|
| ||| |||||||||||||| | |||||||||| ||||| ||||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
11544606 |
aaaaaatctctcatttgttatgtcattgagagtttccgagctagttggttttgagtctattgagcaatatcttccacatagagttgctatgcaatttgga |
11544705 |
T |
|
| Q |
246 |
atggatcaagatgttccaagttatgtgcctagattcaatgaga |
288 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
11544706 |
atggatcaagatgttccagcttgtgtgcctagattcaatgaga |
11544748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 96 - 291
Target Start/End: Complemental strand, 22655948 - 22655753
Alignment:
| Q |
96 |
ttttatccaaatgatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggat |
195 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||| |||||||||| | |||| |||||||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
22655948 |
ttttatcctaatgatgaaattttggtaccatttaagaaggatttggatacaaaaattctctcatttgttgtatgtttgagggtttctgagcttgttggat |
22655849 |
T |
|
| Q |
196 |
ttgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagattcaatgagacta |
291 |
Q |
| |
|
|||| |||||||| | ||| | |||| ||||||| |||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
22655848 |
ttgagtctatagaaaaatatcttccacgtagagtttctatgcaatttggaattgatcaagatgttccgggttatgtagctaggttcaatgagacta |
22655753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 11563907 - 11563863
Alignment:
| Q |
244 |
gaatggatcaagatgttccaagttatgtgcctagattcaatgaga |
288 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
11563907 |
gaatggatcaagatgttccagcttgtgtgcctagattcaatgaga |
11563863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 39191551 - 39191414
Alignment:
| Q |
153 |
ctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatc |
252 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| ||||| ||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
39191551 |
ctctcatttgttatgtcattgagagtttcggagctagttggttttgagtctattgagcaatatcttccacatagagttgctatgcaatttggaatggatc |
39191452 |
T |
|
| Q |
253 |
aagatgttccaagttatgtgcctagattcaatgagact |
290 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| |
|
|
| T |
39191451 |
aagatgttccagattgtgtgcctagattcaatgagact |
39191414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 12495722 - 12495448
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtgg----tgtat |
96 |
Q |
| |
|
||||| |||||||||||||| || | | |||||||| | |||||||||||||||||||||||||| ||||||| | || | ||||| | | | |
|
|
| T |
12495722 |
ccttgcaaattgacaatgttcagtttgcattagactcaagtgtcaatgattttctttggcgtccatatgctagatatcctgagaagtgtggaattttttt |
12495623 |
T |
|
| Q |
97 |
tttatccaaatgatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggatt |
196 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||||| |||||||||||| |||| || | |||| ||||||| |||||| || ||||||||||||||| |
|
|
| T |
12495622 |
tttatccaaataatgaaatttgggtaccatttaagaaggatttggataaaaaaatactttgattttctatatgcttgagagattttgagcttgttggatt |
12495523 |
T |
|
| Q |
197 |
tgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgt |
271 |
Q |
| |
|
| | ||||||||| ||| | | ||||||||| |||| ||||||||||| || |||||| || | |||||||| |
|
|
| T |
12495522 |
taagcgtatagagcaatatcttctacatagagtgtctatacaatttggaattgaccaagatatttcgagttatgt |
12495448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 12579818 - 12579545
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtgg--tgtattt |
98 |
Q |
| |
|
||||| ||||||||||||||||| | | |||||||| | | |||||||||||||| ||||||||| ||||||| | | | ||||| | | ||| |
|
|
| T |
12579818 |
ccttgcaaattgacaatgttaagtttgcattagactcaagtgttaatgattttctttgacgtccatatgctagatatcctaagaagtgtggaatttcttt |
12579719 |
T |
|
| Q |
99 |
tatccaaatgatgcaatttcagtaccatttaagaaagatttggataaacaaa-tgctctcatttgttatatgcctgagagtttctgagcttgttggattt |
197 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||| |||||||||||| ||| | || | |||| ||||||| |||||| || |||||||||||||||| |
|
|
| T |
12579718 |
tatccaaataatgaaatttgggtaccatttaagaaggatttggataaaaaaaatactttgattttctatatgcttgagagattttgagcttgttggattt |
12579619 |
T |
|
| Q |
198 |
gactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgt |
271 |
Q |
| |
|
| |||||||||| ||| | | ||||||||| |||| ||||||||||| || |||||| || |||||||||| |
|
|
| T |
12579618 |
aagcctatagagcaatatcttcgacatagagtgtctatacaatttggaattgaccaagatatttcaagttatgt |
12579545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 12519523 - 12519326
Alignment:
| Q |
1 |
ccttggaaattgacaatgttaagctggaattagacttggctatcaatgattttctttggcgtccatattttagatatgcagatgaatgtgg--tgtattt |
98 |
Q |
| |
|
||||| ||||||||||||||||| | | |||||||| | |||||||||||||||| ||||||||| ||||||| | || | ||||| | | ||| |
|
|
| T |
12519523 |
ccttgcaaattgacaatgttaagtttgcattagactcaagtgtcaatgattttctttg-cgtccatatgctagatatcctgagaagtgtggaattttttt |
12519425 |
T |
|
| Q |
99 |
tatccaaatgatgcaatttcagtaccatttaagaaagatttggataaacaaatgctctcatttgttatatgcctgagagtttctgagcttgttggattt |
197 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||| |||||||||||| |||| || | |||| ||||||| |||||| || |||| ||||||||||| |
|
|
| T |
12519424 |
tatccaaataatgaaatttgggtaccatttaagaaggatttggataaaaaaatactttgattttctatatgcttgagagattttgaggttgttggattt |
12519326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 12581823 - 12581923
Alignment:
| Q |
172 |
tgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgt |
271 |
Q |
| |
|
||||||||||| ||||| |||||||||| | |||||||| | | | | ||||| |||| ||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
12581823 |
tgagagtttctaagcttattggatttgagtatatagagctatgtcttcgacatacagtttttatgcaatttggaattgatcaagatgtttcaagttatgt |
12581922 |
T |
|
| Q |
272 |
g |
272 |
Q |
| |
|
| |
|
|
| T |
12581923 |
g |
12581923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 12497712 - 12497808
Alignment:
| Q |
176 |
agtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtg |
272 |
Q |
| |
|
||||||| ||||| |||||||||| | ||| |||| | | | || ||||||||| ||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
12497712 |
agtttctaagcttattggatttgagtatattgagctatgtcttccgcatagagtttgtatgcaatttggaattgattaagatgtttcaagttatgtg |
12497808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 12521577 - 12521673
Alignment:
| Q |
176 |
agtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtg |
272 |
Q |
| |
|
||||||| ||||| |||||||||| | ||| |||| | | | || ||||||||| ||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
12521577 |
agtttctaagcttattggatttgagtatattgagctatgtcttccgcatagagtttgtatgcaatttggaattgattaagatgtttcaagttatgtg |
12521673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 272
Target Start/End: Original strand, 6398918 - 6399095
Alignment:
| Q |
96 |
ttttatccaaatgatgcaatttcagtaccatttaagaaagatttggataaacaaa-tgctctcatttgttatatgcctgagagtttctgagcttgttgga |
194 |
Q |
| |
|
|||||||||||| | | ||||| |||||| | ||||| |||||||||||| ||| | || |||||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
6398918 |
ttttatccaaataacggaatttgggtaccactaaagaaggatttggataaaaaaaatactttcattttctatatgtttgagagtttatgagcttgttgga |
6399017 |
T |
|
| Q |
195 |
tttgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtg |
272 |
Q |
| |
|
|||| |||||| || | ||| | || ||||||| ||||||| |||||||| || |||||| || | ||||||||| |
|
|
| T |
6399018 |
attgagtctataaagaaatatcatctacgtagagtttctatgcagtttggaattgaccaagatctttcgagttatgtg |
6399095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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