View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20076_high_57 (Length: 275)
Name: NF20076_high_57
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_57 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 47 - 257
Target Start/End: Original strand, 16458183 - 16458393
Alignment:
| Q |
47 |
ttacctgatgaaaacctggttcatgtgtcaatcctacaccaagttcagctaagcaagagtaaactctaccatcacttccatataaatgagggtacctttc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16458183 |
ttacctgatgaaaacctggttcatgtgtcaatcctacaccaagttctgctaaacaagagtaaactctaccatcacttccatatagatgagggtacctttc |
16458282 |
T |
|
| Q |
147 |
caaacaagaatcaaaaaccttagccaaaactttagcaagagatgaactaatagcaaaaccagcaccaccaaaagccattccaaaaccaaacaaacgattc |
246 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16458283 |
caaacaagaatcaaaaacctttgccaaaactttagcaagagatgaactaatagcaaaaccagcaccaccaaaagccattccaaaaccaaacaaacgattc |
16458382 |
T |
|
| Q |
247 |
tgctcataaat |
257 |
Q |
| |
|
||||||||||| |
|
|
| T |
16458383 |
tgctcataaat |
16458393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 16465489 - 16465665
Alignment:
| Q |
48 |
tacctgatgaaaacctggttcatgtgtcaatcctacaccaagttcagctaagcaagagtaaactctaccatcacttccatataaatgagggtacctttcc |
147 |
Q |
| |
|
|||||||||||| || |||||||| ||||| |||||||||||||| | ||||| |||| ||| ||||||||||||| ||| ||||| | |
|
|
| T |
16465489 |
tacctgatgaaacccaggttcatgagtcaaagtaacaccaagttcagcaacacaagaataaatcctagcatcacttccatacaaaaacccatacctcctc |
16465588 |
T |
|
| Q |
148 |
aaacaagaatcaaaaaccttagccaaaactttagcaagagatgaactaatagcaaaaccagcaccaccaaaagccat |
224 |
Q |
| |
|
||||||||||| |||||| |||| ||||| ||| |||| || ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
16465589 |
aaacaagaatccaaaaccctagctaaaaccttaccaagtgaataactaatagcaaaaccaccaccaccaaacgccat |
16465665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 41 - 236
Target Start/End: Original strand, 37514876 - 37515071
Alignment:
| Q |
41 |
tatttgttacctgatgaaaacctggttcatgtgtcaatcctacaccaagttcagctaagcaagagtaaactctaccatcacttccatataaatgagggta |
140 |
Q |
| |
|
||||| ||||||| |||||||| ||||||| ||| ||||| ||||||||||| |||| ||||||| | || ||| ||||||||||||| | ||||| || |
|
|
| T |
37514876 |
tatttattacctggtgaaaaccgggttcatatgttaatccaacaccaagttctgctatgcaagagaacaccctagcatcacttccataaagatgagaata |
37514975 |
T |
|
| Q |
141 |
cctttccaaacaagaatcaaaaaccttagccaaaactttagcaagagatgaactaatagcaaaaccagcaccaccaaaagccattccaaaaccaaa |
236 |
Q |
| |
|
||||| | ||| ||||||||||||||||| ||||| || || | ||| | ||| | |||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
37514976 |
tctttcaatacatgaatcaaaaaccttagctaaaacatttgctaaagaagcacttaaagcaaaaccacctccaccaaaagccattccaaaaccaaa |
37515071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University