View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20076_high_59 (Length: 273)

Name: NF20076_high_59
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20076_high_59
NF20076_high_59
[»] chr2 (30 HSPs)
chr2 (27-137)||(16082656-16082765)
chr2 (30-111)||(20123098-20123179)
chr2 (179-255)||(16082804-16082880)
chr2 (30-108)||(33007762-33007840)
chr2 (115-155)||(247688-247728)
chr2 (113-158)||(17250996-17251041)
chr2 (113-161)||(375380-375428)
chr2 (113-157)||(4758052-4758096)
chr2 (113-161)||(37355058-37355106)
chr2 (113-155)||(4398559-4398601)
chr2 (113-158)||(23464708-23464753)
chr2 (123-155)||(14527651-14527683)
chr2 (116-155)||(3237751-3237790)
chr2 (112-155)||(24774893-24774936)
chr2 (116-155)||(27297605-27297644)
chr2 (112-154)||(6275602-6275643)
chr2 (113-155)||(14420705-14420747)
chr2 (113-155)||(15851559-15851601)
chr2 (116-154)||(21012882-21012920)
chr2 (113-155)||(31644477-31644519)
chr2 (113-155)||(41665738-41665780)
chr2 (113-154)||(8384007-8384048)
chr2 (113-158)||(26512096-26512141)
chr2 (113-158)||(34330027-34330072)
chr2 (114-158)||(1246449-1246493)
chr2 (112-152)||(2521334-2521374)
chr2 (123-155)||(8065117-8065149)
chr2 (123-155)||(9718217-9718249)
chr2 (123-155)||(41865744-41865776)
chr2 (115-155)||(45214753-45214793)
[»] chr6 (17 HSPs)
chr6 (30-111)||(21605380-21605461)
chr6 (123-158)||(28238360-28238395)
chr6 (112-154)||(12514620-12514662)
chr6 (113-155)||(31945948-31945990)
chr6 (114-155)||(3729417-3729458)
chr6 (116-157)||(9428193-9428234)
chr6 (113-158)||(11302880-11302925)
chr6 (114-154)||(10669311-10669351)
chr6 (113-157)||(16327149-16327193)
chr6 (113-155)||(1763841-1763883)
chr6 (113-155)||(15981822-15981864)
chr6 (122-156)||(31487406-31487440)
chr6 (116-154)||(33607384-33607422)
chr6 (113-158)||(197487-197532)
chr6 (123-152)||(3887988-3888017)
chr6 (38-87)||(31439299-31439348)
chr6 (123-155)||(4250704-4250736)
[»] chr8 (23 HSPs)
chr8 (113-155)||(7172247-7172289)
chr8 (113-155)||(36309632-36309674)
chr8 (113-154)||(31746441-31746482)
chr8 (112-155)||(24512202-24512245)
chr8 (113-155)||(26878764-26878806)
chr8 (116-154)||(34882699-34882737)
chr8 (113-155)||(38761394-38761436)
chr8 (113-154)||(12762871-12762912)
chr8 (112-155)||(3113568-3113611)
chr8 (113-155)||(7772540-7772582)
chr8 (113-155)||(38770223-38770265)
chr8 (113-151)||(41541581-41541619)
chr8 (113-155)||(44255481-44255523)
chr8 (114-155)||(57225-57266)
chr8 (113-154)||(5191585-5191626)
chr8 (114-155)||(14577689-14577730)
chr8 (113-154)||(30262574-30262615)
chr8 (113-154)||(36437530-36437571)
chr8 (113-158)||(40337227-40337272)
chr8 (123-155)||(14906629-14906661)
chr8 (123-155)||(31252701-31252733)
chr8 (112-152)||(35709134-35709174)
chr8 (123-155)||(37956149-37956181)
[»] chr1 (35 HSPs)
chr1 (30-111)||(22157886-22157967)
chr1 (113-155)||(38680502-38680544)
chr1 (113-154)||(6282502-6282543)
chr1 (114-154)||(28679856-28679896)
chr1 (113-155)||(30336086-30336128)
chr1 (113-155)||(46495336-46495378)
chr1 (113-155)||(47133473-47133515)
chr1 (112-152)||(2342934-2342974)
chr1 (115-155)||(23982628-23982668)
chr1 (123-155)||(28723697-28723729)
chr1 (123-155)||(31808016-31808048)
chr1 (114-154)||(32152186-32152226)
chr1 (112-155)||(3143430-3143473)
chr1 (123-154)||(4813506-4813537)
chr1 (112-155)||(5085122-5085165)
chr1 (112-155)||(16582560-16582603)
chr1 (116-155)||(34102363-34102402)
chr1 (112-151)||(35366017-35366056)
chr1 (115-154)||(40261623-40261662)
chr1 (113-155)||(8984695-8984737)
chr1 (113-155)||(9684752-9684794)
chr1 (113-155)||(29140688-29140730)
chr1 (113-155)||(33231867-33231909)
chr1 (112-154)||(34012085-34012127)
chr1 (113-155)||(44163259-44163301)
chr1 (113-155)||(44335316-44335358)
chr1 (113-155)||(47070995-47071037)
chr1 (113-155)||(48721902-48721944)
chr1 (113-158)||(8877796-8877841)
chr1 (123-152)||(15911596-15911625)
chr1 (113-154)||(47754676-47754717)
chr1 (113-154)||(50692437-50692478)
chr1 (114-154)||(3072167-3072207)
chr1 (113-153)||(3831076-3831116)
chr1 (123-155)||(16395592-16395624)
[»] chr5 (20 HSPs)
chr5 (113-155)||(36177320-36177362)
chr5 (113-158)||(3559061-3559106)
chr5 (122-163)||(18729608-18729649)
chr5 (113-155)||(15898497-15898539)
chr5 (113-154)||(600794-600835)
chr5 (113-154)||(20946116-20946157)
chr5 (113-158)||(25017708-25017753)
chr5 (113-158)||(27587863-27587908)
chr5 (113-154)||(41521217-41521258)
chr5 (123-155)||(11980744-11980776)
chr5 (112-152)||(21912151-21912191)
chr5 (123-155)||(43060554-43060586)
chr5 (113-155)||(4857528-4857570)
chr5 (38-101)||(18252956-18253021)
chr5 (114-155)||(129638-129679)
chr5 (114-155)||(10523309-10523350)
chr5 (114-155)||(24781303-24781344)
chr5 (123-152)||(30348121-30348150)
chr5 (113-154)||(32067857-32067898)
chr5 (122-158)||(16969399-16969435)
[»] chr4 (24 HSPs)
chr4 (113-155)||(38136383-38136425)
chr4 (112-160)||(37175056-37175104)
chr4 (113-155)||(3094210-3094252)
chr4 (113-155)||(31937427-31937469)
chr4 (123-155)||(34543730-34543762)
chr4 (123-155)||(48472540-48472572)
chr4 (116-155)||(3684226-3684265)
chr4 (112-155)||(10602240-10602283)
chr4 (123-154)||(31486517-31486548)
chr4 (123-158)||(37625170-37625205)
chr4 (123-157)||(5448688-5448722)
chr4 (113-155)||(5932914-5932956)
chr4 (113-155)||(24072795-24072837)
chr4 (113-155)||(25477253-25477295)
chr4 (113-155)||(29584922-29584964)
chr4 (116-154)||(39414265-39414303)
chr4 (113-155)||(46729333-46729375)
chr4 (113-151)||(52768934-52768972)
chr4 (114-155)||(20262430-20262471)
chr4 (113-158)||(52226044-52226089)
chr4 (113-154)||(56373379-56373420)
chr4 (123-155)||(16070459-16070491)
chr4 (123-155)||(20291368-20291400)
chr4 (123-155)||(51787799-51787831)
[»] chr3 (37 HSPs)
chr3 (113-155)||(27638114-27638156)
chr3 (112-152)||(41543643-41543683)
chr3 (116-155)||(29611861-29611900)
chr3 (122-157)||(37729075-37729110)
chr3 (116-155)||(42010895-42010934)
chr3 (113-155)||(11393949-11393991)
chr3 (113-155)||(12077780-12077822)
chr3 (112-154)||(27047214-27047256)
chr3 (113-155)||(33287893-33287935)
chr3 (113-155)||(41727275-41727317)
chr3 (113-155)||(52325540-52325582)
chr3 (114-155)||(14645927-14645968)
chr3 (114-154)||(33412011-33412051)
chr3 (123-158)||(13084405-13084440)
chr3 (112-155)||(29676775-29676818)
chr3 (112-155)||(31531461-31531504)
chr3 (113-152)||(35055816-35055855)
chr3 (112-155)||(40645701-40645744)
chr3 (123-154)||(41740020-41740051)
chr3 (123-153)||(21932955-21932985)
chr3 (113-155)||(26121359-26121401)
chr3 (113-155)||(28243786-28243828)
chr3 (112-154)||(28477413-28477455)
chr3 (113-155)||(30476068-30476110)
chr3 (113-155)||(34055899-34055941)
chr3 (113-155)||(46435767-46435809)
chr3 (114-155)||(11388148-11388189)
chr3 (34-111)||(15245010-15245087)
chr3 (112-157)||(26998920-26998965)
chr3 (113-154)||(48901554-48901595)
chr3 (113-154)||(48903120-48903161)
chr3 (123-155)||(11344585-11344617)
chr3 (123-155)||(20945347-20945379)
chr3 (123-155)||(25750554-25750586)
chr3 (123-155)||(41308823-41308855)
chr3 (123-155)||(41825184-41825216)
chr3 (123-155)||(44083654-44083686)
[»] scaffold0038 (1 HSPs)
scaffold0038 (123-158)||(38522-38557)
[»] chr7 (17 HSPs)
chr7 (112-155)||(37673765-37673808)
chr7 (113-155)||(20123478-20123520)
chr7 (113-155)||(25750396-25750438)
chr7 (116-154)||(28663784-28663822)
chr7 (113-154)||(31373733-31373774)
chr7 (30-110)||(9598494-9598574)
chr7 (30-110)||(9826065-9826145)
chr7 (113-161)||(40211312-40211360)
chr7 (123-155)||(48193643-48193675)
chr7 (113-155)||(1324736-1324778)
chr7 (113-155)||(21388270-21388312)
chr7 (113-155)||(21801091-21801133)
chr7 (113-155)||(35128412-35128454)
chr7 (113-155)||(48767592-48767634)
chr7 (123-155)||(4089545-4089577)
chr7 (123-155)||(29636085-29636117)
chr7 (123-155)||(40740978-40741010)
[»] scaffold1091 (1 HSPs)
scaffold1091 (123-155)||(1958-1990)
[»] scaffold0013 (1 HSPs)
scaffold0013 (113-155)||(49164-49206)
[»] scaffold0166 (1 HSPs)
scaffold0166 (114-155)||(23686-23727)
[»] scaffold0012 (1 HSPs)
scaffold0012 (112-149)||(99851-99888)


Alignment Details
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 16082656 - 16082765
Alignment:
Q  27 gaaaagagaacctaggcaaaccagccatatgtataaactgcatgaaatgctggcgaagctctccaggaagaaccgctgaaataccagacaattttataat 126  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16082656 gaaaagagaacctacgcaaaccaaccatatgtataaactgcatgaaatgttggcgaagctct-caggaagaaccgctgaaataccagacaattttataat 16082754  T
Q  127 attaacacaca 137  Q
    |||||||||||    
T  16082755 attaacacaca 16082765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 20123179 - 20123098
Alignment:
Q  30 aagagaacctaggcaaaccagccatatgtataaactgcatgaaatgctggcgaagctctccaggaagaaccgctgaaatacc 111  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  20123179 aagagaacctaggcaaacccaccatatgtataaactgcatgaaatgatggcgaagctctccaggaaggaccgctgaaatacc 20123098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 16082804 - 16082880
Alignment:
Q  179 aaaatgcaaaaagtacttacatacaggaacatagcgagtaaaaatgataagttaataattgaacttgccactctcct 255  Q
    ||||||||||  ||||||||||||||| |||||  ||||||||| |||||||| |||||||||||||||||||||||    
T  16082804 aaaatgcaaagggtacttacatacagggacataaggagtaaaaaggataagttgataattgaacttgccactctcct 16082880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 33007762 - 33007840
Alignment:
Q  30 aagagaacctaggcaaaccagccatatgtataaactgcatgaaatgctggcgaagctctccaggaagaaccgctgaaat 108  Q
    ||||||| |||||||||||||||||||| ||||||||||  ||||| || |||||||||||| ||| ||||| ||||||    
T  33007762 aagagaatctaggcaaaccagccatatgaataaactgcacaaaatgatgacgaagctctccatgaaaaaccgatgaaat 33007840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 247728 - 247688
Alignment:
Q  115 caattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  247728 caattttataatattaacacacaaaatagacacattaatta 247688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 17250996 - 17251041
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||    
T  17250996 gacaattttgtaatattaacacacaaaacagacacattaattatac 17251041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 375380 - 375428
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatacaaa 161  Q
    |||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  375380 gacaatttgataatactaacacacaaaatagacacattaattacacaaa 375428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 4758096 - 4758052
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattata 157  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||    
T  4758096 gacaatttcataatattaacacacaaaataaacacattaattata 4758052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 37355106 - 37355058
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatacaaa 161  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  37355106 gacaattttgtaatattaacacacaaaagagacacattaattacacaaa 37355058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 4398559 - 4398601
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  4398559 gacaatttcgtaatattaacacacaaaatagacacattaatta 4398601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 23464753 - 23464708
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    |||||||| |||||||| || |||||||||||||||||||||||||    
T  23464753 gacaatttgataatatttacgcacaaaatagacacattaattatac 23464708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 14527683 - 14527651
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||    
T  14527683 taatattaacacacaaaatagacacattaatta 14527651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 3237790 - 3237751
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  3237790 aattttgtaatattaacacacaaaacagacacattaatta 3237751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 24774936 - 24774893
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||||  |||||||||||||||||||||| ||||||||||    
T  24774936 agacaatttggtaatattaacacacaaaatagatacattaatta 24774893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 27297644 - 27297605
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  27297644 aattttgtaatattaacacacaaaacagacacattaatta 27297605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 6275602 - 6275643
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  6275602 agacaatttcataat-ttaacacacaaaatagacacattaatt 6275643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 14420747 - 14420705
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  14420747 gacaatttggtaatattaacacacaaaacagacacattaatta 14420705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 15851601 - 15851559
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| |||||||||||||| |||| ||||||||||||||    
T  15851601 gacaatttcataatattaacacaaaaaacagacacattaatta 15851559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 21012920 - 21012882
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  21012920 aatttgataatattaacacacaaaataaacacattaatt 21012882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 31644477 - 31644519
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||    
T  31644477 gacaattttgtaatattaacacaaaaaacagacacattaatta 31644519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 41665780 - 41665738
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||    
T  41665780 gacaatttgatactattaacacacaaaacagacacattaatta 41665738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 8384007 - 8384048
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  |||||||||||||||||||| |||||||||||    
T  8384007 gacaatttggtaatattaacacacaaaataaacacattaatt 8384048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 26512141 - 26512096
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||  ||||||||||||| |||||| |||||||||||||||    
T  26512141 gacaatttagtaatattaacacataaaataaacacattaattatac 26512096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 34330072 - 34330027
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||||    
T  34330072 gacaattttgtaatattaacacacaaaacaggtacattaattatac 34330027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 1246449 - 1246493
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaattatac 158  Q
    ||||||| ||||||||||||||||||| | |||| ||||||||||    
T  1246449 acaatttcataatattaacacacaaaacaaacacgttaattatac 1246493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 2521334 - 2521374
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaa 152  Q
    ||||||||| ||||||||| |||| ||||||||||||||||    
T  2521334 agacaatttaataatattaccacataaaatagacacattaa 2521374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 8065117 - 8065149
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||| ||||||||||||||    
T  8065117 taatattaacacacaaaacagacacattaatta 8065149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 9718217 - 9718249
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||| ||||||||||||||    
T  9718217 taatattaacacacaaaacagacacattaatta 9718249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 41865776 - 41865744
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||| ||||||||||||||||||||||||||||    
T  41865776 taatgttaacacacaaaatagacacattaatta 41865744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 45214793 - 45214753
Alignment:
Q  115 caattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||| | ||||||||||||||||| ||||||||||||||    
T  45214793 caatttgaaaatattaacacacaaaacagacacattaatta 45214753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 21605380 - 21605461
Alignment:
Q  30 aagagaacctaggcaaaccagccatatgtataaactgcatgaaatgctggcgaagctctccaggaagaaccgctgaaatacc 111  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21605380 aagagaacctaggcaaaccaaccatctgtataaactgcatgaaatgctggcgaagctctccaggaagaaccgctgaaatacc 21605461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 28238360 - 28238395
Alignment:
Q  123 taatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  28238360 taatattaacacacaaaatagacacattaattatac 28238395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 12514620 - 12514662
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatt 154  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  12514620 agacaatttggtaatattaacacacaaaatagacacattaatt 12514662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 31945948 - 31945990
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  31945948 gacaatttggtaatattaacacacaaaatagacacattaatta 31945990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 3729458 - 3729417
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  3729458 acaatttggtaatattaacacacaaaatagacacattaatta 3729417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 9428234 - 9428193
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaattata 157  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  9428234 aatttgataatattaacacacaaaatagatacattaattata 9428193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 11302925 - 11302880
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||| ||||||||||||| |||| |||||||||||||||||    
T  11302925 gacaattttgtaatattaacacaaaaaacagacacattaattatac 11302880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 10669311 - 10669351
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatt 154  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  10669311 acaatttggtaatattaacacacaaaatagacacattaatt 10669351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 16327193 - 16327149
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattata 157  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||    
T  16327193 gacaatttggtaatattaacacacaaaacagacacattaattata 16327149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 1763883 - 1763841
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  1763883 gacaatttagtaatattaacacacaaaacagacacattaatta 1763841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 15981864 - 15981822
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  15981864 gacaatttggtaatattaacacacaaaacagacacattaatta 15981822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 31487406 - 31487440
Alignment:
Q  122 ataatattaacacacaaaatagacacattaattat 156  Q
    ||||||||||||||||||||| |||||||||||||    
T  31487406 ataatattaacacacaaaatatacacattaattat 31487440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 33607422 - 33607384
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  33607422 aatttgataatattaacacactaaatagacacattaatt 33607384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 197487 - 197532
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    |||||||| |||||||| |||||||||| | |||||||||||||||    
T  197487 gacaatttaataatattgacacacaaaacaaacacattaattatac 197532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 3887988 - 3888017
Alignment:
Q  123 taatattaacacacaaaatagacacattaa 152  Q
    ||||||||||||||||||||||||||||||    
T  3887988 taatattaacacacaaaatagacacattaa 3888017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 31439348 - 31439299
Alignment:
Q  38 ctaggcaaaccagccatatgtataaactgcatgaaatgctggcgaagctc 87  Q
    |||||||||||||||||||| ||||||||||  ||||| || ||||||||    
T  31439348 ctaggcaaaccagccatatgaataaactgcaaaaaatgatgtcgaagctc 31439299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 4250704 - 4250736
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||| ||||||||||||||    
T  4250704 taatattaacacacaaaacagacacattaatta 4250736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 7172289 - 7172247
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7172289 gacaattttataatattaacacacaaaatagacacattaatta 7172247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 36309632 - 36309674
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  36309632 gacaatttgataatattaacacacaaaatagacacattaatta 36309674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 31746441 - 31746482
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  31746441 gacaattttgtaatattaacacacaaaatagacacattaatt 31746482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 24512202 - 24512245
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  24512202 agacaatttgataatattaacacacaaaacagacacattaatta 24512245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 26878764 - 26878806
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  26878764 gacaatttggtaatattaacacacaaaatagacacattaatta 26878806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 34882737 - 34882699
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  34882737 aatttgataatattaacacacaaaatagacacattaatt 34882699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 38761394 - 38761436
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  38761394 gacaatttcataatattaacacacaaaacagacacattaatta 38761436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 12762912 - 12762871
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  12762912 gacaatttagtaatattaacacacaaaatagacacattaatt 12762871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 3113568 - 3113611
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||    
T  3113568 agacaatttgataatattaacacacaaaacagacatattaatta 3113611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 7772582 - 7772540
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  7772582 gacaatttcgtaatattaacacacaaaacagacacattaatta 7772540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 38770223 - 38770265
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  38770223 gacaatttcgtaatattaacacacaaaataaacacattaatta 38770265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 41541619 - 41541581
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacatta 151  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  41541619 gacaatttgataatattgacacacaaaatagacacatta 41541581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 44255523 - 44255481
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| || |||||||||||    
T  44255523 gacaatttgataatattaacacacaaaaaaggcacattaatta 44255481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 57225 - 57266
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||  |||||||||||||||||| ||||||||||||||    
T  57225 acaatttcgtaatattaacacacaaaacagacacattaatta 57266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 5191585 - 5191626
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  |||||||||||||||||| |||||||||||||    
T  5191585 gacaatttggtaatattaacacacaaaacagacacattaatt 5191626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 14577689 - 14577730
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||  ||||||||||| |||||||||||||||||||||    
T  14577689 acaatttggtaatattaacaaacaaaatagacacattaatta 14577730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 30262574 - 30262615
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  ||||||||||| ||||||||||||||||||||    
T  30262574 gacaatttggtaatattaacatacaaaatagacacattaatt 30262615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 36437571 - 36437530
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  |||| |||||||||||||||||||||||||||    
T  36437571 gacaatttggtaatgttaacacacaaaatagacacattaatt 36437530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 40337227 - 40337272
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||| ||||||||||| |||||| | |||||||||||||||    
T  40337227 gacaattttgtaatattaacatacaaaacatacacattaattatac 40337272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 14906661 - 14906629
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||| ||||||||    
T  14906661 taatattaacacacaaaatagacatattaatta 14906629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 31252701 - 31252733
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||| ||||||||||||||    
T  31252701 taatattaacacacaaaacagacacattaatta 31252733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 35709134 - 35709174
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaa 152  Q
    ||||||||| |||||||||||||| ||| ||||||||||||    
T  35709134 agacaatttgataatattaacacataaactagacacattaa 35709174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 37956181 - 37956149
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||| ||||||||||||||    
T  37956181 taatattaacacacaaaacagacacattaatta 37956149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 22157886 - 22157967
Alignment:
Q  30 aagagaacctaggcaaaccagccatatgtataaactgcatgaaatgctggcgaagctctccaggaagaaccgctgaaatacc 111  Q
    ||||||||||||||||||||| ||||||| |||||||||  ||| | || |||||||||||| ||||||| | |||||||||    
T  22157886 aagagaacctaggcaaaccagacatatgtgtaaactgcacaaaaagatgacgaagctctccatgaagaactgatgaaatacc 22157967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 38680544 - 38680502
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  38680544 gacaatttgataatattaacacacaaaatagacacattaatta 38680502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 6282543 - 6282502
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  6282543 gacaattttataatattaacacataaaatagacacattaatt 6282502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 28679856 - 28679896
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  28679856 acaatttaataatattaacacacaaaatagacacattaatt 28679896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 30336128 - 30336086
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  30336128 gacaatttggtaatattaacacacaaaatagacacattaatta 30336086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 46495378 - 46495336
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  46495378 gacaatttgataatattaacacacaaaacagacacattaatta 46495336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 47133473 - 47133515
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  47133473 gacaatttaataatattaacacacaaaataaacacattaatta 47133515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 2342974 - 2342934
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaa 152  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  2342974 agacaatttggtaatattaacacacaaaatagacacattaa 2342934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 23982628 - 23982668
Alignment:
Q  115 caattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  23982628 caatttgataatattaacacacaaaacagacacattaatta 23982668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 28723697 - 28723729
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||    
T  28723697 taatattaacacacaaaatagacacattaatta 28723729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 31808016 - 31808048
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||    
T  31808016 taatattaacacacaaaatagacacattaatta 31808048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 32152226 - 32152186
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatt 154  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  32152226 acaatttggtaatattaacacacaaaatagacacattaatt 32152186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 3143473 - 3143430
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||||| |||||||||||||||||  ||||||||||||||    
T  3143473 agacaattttgtaatattaacacacaaagcagacacattaatta 3143430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 154
Target Start/End: Original strand, 4813506 - 4813537
Alignment:
Q  123 taatattaacacacaaaatagacacattaatt 154  Q
    ||||||||||||||||||||||||||||||||    
T  4813506 taatattaacacacaaaatagacacattaatt 4813537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 5085122 - 5085165
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||||  |||||||||||||||||| ||||||||||||||    
T  5085122 agacaatttcgtaatattaacacacaaaacagacacattaatta 5085165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 16582603 - 16582560
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||||  |||||||||||||||||| ||||||||||||||    
T  16582603 agacaatttcgtaatattaacacacaaaacagacacattaatta 16582560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 34102402 - 34102363
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  34102402 aatttgataatattaacacacaaaacagacacattaatta 34102363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 151
Target Start/End: Original strand, 35366017 - 35366056
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacatta 151  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  35366017 agacaatttgataatattaacacacaaaatagatacatta 35366056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 40261662 - 40261623
Alignment:
Q  115 caattttataatattaacacacaaaatagacacattaatt 154  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  40261662 caatttgataatattaacacacaaaataaacacattaatt 40261623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 8984695 - 8984737
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  8984695 gacaatttagtaatattaacacacaaaacagacacattaatta 8984737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 9684752 - 9684794
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||    
T  9684752 gacaattttgtaatattaacgcacaaaacagacacattaatta 9684794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 29140688 - 29140730
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||    
T  29140688 gacaattttgtaatattaatacacaaaacagacacattaatta 29140730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 33231909 - 33231867
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  33231909 gacaatttcgtaatattaacacacaaaacagacacattaatta 33231867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 34012127 - 34012085
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||| |||||||||||||| |||| |||||||||||||    
T  34012127 agacaatttcataatattaacacataaaacagacacattaatt 34012085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 44163301 - 44163259
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| | ||||||||||||    
T  44163301 gacaatttaataatattaacacacaaaacaaacacattaatta 44163259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 44335358 - 44335316
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  44335358 gacaatttggtaatattaacacacaaaacagacacattaatta 44335316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 47070995 - 47071037
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  ||||||||||||| |||||||||||||||||||    
T  47070995 gacaatttggtaatattaacacataaaatagacacattaatta 47071037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 48721902 - 48721944
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  48721902 gacaatttcgtaatattaacacacaaaacagacacattaatta 48721944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 8877841 - 8877796
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||    
T  8877841 gacaatttcgtaatattaacacacaaaacaaacacattaattatac 8877796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 15911596 - 15911625
Alignment:
Q  123 taatattaacacacaaaatagacacattaa 152  Q
    ||||||||||||||||||||||||||||||    
T  15911596 taatattaacacacaaaatagacacattaa 15911625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 47754676 - 47754717
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  ||||||||||||| ||||||||||||||||||    
T  47754676 gacaatttggtaatattaacacaaaaaatagacacattaatt 47754717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 50692478 - 50692437
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  ||||| ||||||||||||||||||||||||||    
T  50692478 gacaatttggtaatactaacacacaaaatagacacattaatt 50692437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 3072207 - 3072167
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||| |||||||||||||| |||||| |||||||||||    
T  3072207 acaatttaataatattaacacataaaataaacacattaatt 3072167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 3831116 - 3831076
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaat 153  Q
    ||||||||  |||||||||||||||||||||| ||||||||    
T  3831116 gacaatttcgtaatattaacacacaaaatagatacattaat 3831076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 16395592 - 16395624
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    ||||||||||| |||||||||||||||||||||    
T  16395592 taatattaacatacaaaatagacacattaatta 16395624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 36177362 - 36177320
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  36177362 gacaattttgtaatattaacacacaaaatagacacattaatta 36177320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 3559061 - 3559106
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  3559061 gacaatttggtaatattaacacacaaaatagacacattaattatac 3559106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 18729649 - 18729608
Alignment:
Q  122 ataatattaacacacaaaatagacacattaattatacaaata 163  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  18729649 ataatattaacacacaaaatagacacattaattacacaaata 18729608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 15898497 - 15898539
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  15898497 gacaatttgataatattaacacacaaaacagacacattaatta 15898539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 600835 - 600794
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    |||||||| |||||||||||||||| ||||||||||||||||    
T  600835 gacaatttgataatattaacacacataatagacacattaatt 600794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 20946157 - 20946116
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  20946157 gacaatttgataatattaacacacaaaatagacacgttaatt 20946116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 25017708 - 25017753
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||  |||||||||||||||||| |||||||||||||||||    
T  25017708 gacaatttggtaatattaacacacaaaacagacacattaattatac 25017753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 27587908 - 27587863
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||  |||||||||||||||||| |||||||||||||||||    
T  27587908 gacaatttagtaatattaacacacaaaacagacacattaattatac 27587863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 41521258 - 41521217
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  41521258 gacaatttaataatattaacacacaaaatagacatattaatt 41521217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 11980776 - 11980744
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||    
T  11980776 taatattaacacacaaaatagacacattaatta 11980744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 21912191 - 21912151
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaa 152  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  21912191 agacaatttaataatattaacacataaaatagacacattaa 21912151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 43060554 - 43060586
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||    
T  43060554 taatattaacacacaaaatagacacattaatta 43060586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 4857528 - 4857570
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  ||||||||||||| |||||||||||||||||||    
T  4857528 gacaatttagtaatattaacacataaaatagacacattaatta 4857570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 18253021 - 18252956
Alignment:
Q  38 ctaggcaaaccagccatat--gtataaactgcatgaaatgctggcgaagctctccaggaagaaccg 101  Q
    |||||||||| ||||||||  ||||||||||||  ||||| |||||||||||||||  ||||||||    
T  18253021 ctaggcaaactagccatatatgtataaactgcagaaaatgatggcgaagctctccaaaaagaaccg 18252956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 129679 - 129638
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||  ||||||||| |||||||||||||||||||||||    
T  129679 acaatttggtaatattaatacacaaaatagacacattaatta 129638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 10523309 - 10523350
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||  |||||||||||||||||| ||||||||||||||    
T  10523309 acaatttggtaatattaacacacaaaacagacacattaatta 10523350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 24781303 - 24781344
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||| |||||||||||| |||||||| ||||||||||||    
T  24781303 acaatttgataatattaacatacaaaataaacacattaatta 24781344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 30348121 - 30348150
Alignment:
Q  123 taatattaacacacaaaatagacacattaa 152  Q
    ||||||||||||||||||||||||||||||    
T  30348121 taatattaacacacaaaatagacacattaa 30348150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 32067898 - 32067857
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  ||||||||||||||||||||||||||| ||||    
T  32067898 gacaatttggtaatattaacacacaaaatagacacatgaatt 32067857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 16969435 - 16969399
Alignment:
Q  122 ataatattaacacacaaaatagacacattaattatac 158  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  16969435 ataatattaacaaacaaattagacacattaattatac 16969399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 38136425 - 38136383
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  38136425 gacaatttgataatattaacacacaaaatagacacattaatta 38136383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 37175056 - 37175104
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaattatacaa 160  Q
    |||||||||  ||||||||||||||||||||||||||||||||| ||||    
T  37175056 agacaatttggtaatattaacacacaaaatagacacattaattacacaa 37175104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 3094252 - 3094210
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  3094252 gacaatttggtaatattaacacacaaaatagacacattaatta 3094210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 31937427 - 31937469
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  31937427 gacaatttaataatattaacacacaaaacagacacattaatta 31937469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 34543762 - 34543730
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||    
T  34543762 taatattaacacacaaaatagacacattaatta 34543730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 48472540 - 48472572
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||    
T  48472540 taatattaacacacaaaatagacacattaatta 48472572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 3684226 - 3684265
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  3684226 aatttaataatattaatacacaaaatagacacattaatta 3684265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 10602240 - 10602283
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||||  |||||||||||||||||||||||| ||||||||    
T  10602240 agacaatttagtaatattaacacacaaaatagacaaattaatta 10602283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 154
Target Start/End: Complemental strand, 31486548 - 31486517
Alignment:
Q  123 taatattaacacacaaaatagacacattaatt 154  Q
    ||||||||||||||||||||||||||||||||    
T  31486548 taatattaacacacaaaatagacacattaatt 31486517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 37625170 - 37625205
Alignment:
Q  123 taatattaacacacaaaatagacacattaattatac 158  Q
    |||||||||||||||||||| |||||||||||||||    
T  37625170 taatattaacacacaaaataaacacattaattatac 37625205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 5448722 - 5448688
Alignment:
Q  123 taatattaacacacaaaatagacacattaattata 157  Q
    |||||||||||||||||| ||||||||||||||||    
T  5448722 taatattaacacacaaaacagacacattaattata 5448688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 5932956 - 5932914
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| | ||||||||||||    
T  5932956 gacaatttgataatattaacacacaaaacaaacacattaatta 5932914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 24072837 - 24072795
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| |||||||||||||| |||| ||||||||||||||    
T  24072837 gacaatttcataatattaacacaaaaaacagacacattaatta 24072795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 25477295 - 25477253
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||    
T  25477295 gacaattttgtaatattaacacataaaacagacacattaatta 25477253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 29584964 - 29584922
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  ||||||||||||||| |||||||||||||||||    
T  29584964 gacaatttggtaatattaacacacagaatagacacattaatta 29584922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 39414303 - 39414265
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  39414303 aatttgataatattaacacacaaaatagacatattaatt 39414265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 46729375 - 46729333
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  46729375 gacaatttcgtaatattaacacacaaaacagacacattaatta 46729333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 52768934 - 52768972
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacatta 151  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  52768934 gacaattttgtaatattcacacacaaaatagacacatta 52768972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 20262430 - 20262471
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||  |||||||||||||||||| ||||||||||||||    
T  20262430 acaatttcgtaatattaacacacaaaacagacacattaatta 20262471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 52226089 - 52226044
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatac 158  Q
    |||||||| |||||||||||| | |||| |||||||||||||||||    
T  52226089 gacaatttgataatattaacatataaaacagacacattaattatac 52226044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 56373379 - 56373420
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  |||||||||||||||||||| |||||||||||    
T  56373379 gacaatttggtaatattaacacacaaaataaacacattaatt 56373420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 16070491 - 16070459
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||| ||||||||||||||    
T  16070491 taatattaacacacaaaacagacacattaatta 16070459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 20291400 - 20291368
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||| ||||||||||||||||||||||    
T  20291400 taatattaacccacaaaatagacacattaatta 20291368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 51787831 - 51787799
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||| ||||||||||||||    
T  51787831 taatattaacacacaaaacagacacattaatta 51787799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 27638114 - 27638156
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  27638114 gacaattttataatattaacacacaaaatagagacattaatta 27638156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 41543643 - 41543683
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaa 152  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  41543643 agacaattttataatattatcacacaaaatagacacattaa 41543683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 29611900 - 29611861
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  29611900 aatttgataatattaacacacaaaatagacacattaatta 29611861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 37729075 - 37729110
Alignment:
Q  122 ataatattaacacacaaaatagacacattaattata 157  Q
    ||||||||||||||||||||||||||||||||||||    
T  37729075 ataatattaacacacaaaatagacacattaattata 37729110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 42010934 - 42010895
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  42010934 aatttgataatattaacacacaaaatagacacattaatta 42010895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 11393991 - 11393949
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  11393991 gacaatttgatagtattaacacacaaaatagacacattaatta 11393949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 12077780 - 12077822
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  12077780 gacaattttgtaatattaacacacaaaagagacacattaatta 12077822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 27047214 - 27047256
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatt 154  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  27047214 agacaatttggtaatattaacacacaaaatagacacattaatt 27047256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 33287935 - 33287893
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||||||||| ||||||||    
T  33287935 gacaatttaataatattaacacacaaaatagacaaattaatta 33287893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 41727275 - 41727317
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  41727275 gacaattttgtaatattaacacacaaaacagacacattaatta 41727317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 52325540 - 52325582
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  52325540 gacaatttgataatattaacacataaaatagacacattaatta 52325582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 14645927 - 14645968
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  14645927 acaatttggtaatattaacacacaaaatagacacattaatta 14645968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 33412011 - 33412051
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatt 154  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  33412011 acaatttggtaatattaacacacaaaatagacacattaatt 33412051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 13084405 - 13084440
Alignment:
Q  123 taatattaacacacaaaatagacacattaattatac 158  Q
    |||||||||||||||||| |||||||||||||||||    
T  13084405 taatattaacacacaaaacagacacattaattatac 13084440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 29676775 - 29676818
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||||  ||||||||||||| |||||||||||||||||||    
T  29676775 agacaatttcgtaatattaacacataaaatagacacattaatta 29676818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 31531461 - 31531504
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||    
T  31531461 agacaatttgataatatcaacacacaaaacagacacattaatta 31531504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 35055855 - 35055816
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaa 152  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  35055855 gacaatttggtaatattaacacacaaaatagacacattaa 35055816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 40645744 - 40645701
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||||  |||||||||||||||||| ||||||||||||||    
T  40645744 agacaatttggtaatattaacacacaaaacagacacattaatta 40645701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 154
Target Start/End: Original strand, 41740020 - 41740051
Alignment:
Q  123 taatattaacacacaaaatagacacattaatt 154  Q
    ||||||||||||||||||||||||||||||||    
T  41740020 taatattaacacacaaaatagacacattaatt 41740051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 21932985 - 21932955
Alignment:
Q  123 taatattaacacacaaaatagacacattaat 153  Q
    |||||||||||||||||||||||||||||||    
T  21932985 taatattaacacacaaaatagacacattaat 21932955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 26121401 - 26121359
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| | ||||||||||||    
T  26121401 gacaatttgataatattaacacacaaaacaaacacattaatta 26121359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 28243828 - 28243786
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| || |||||||||||||||||| ||||||||||||    
T  28243828 gacaatttgattatattaacacacaaaataaacacattaatta 28243786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 28477455 - 28477413
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatt 154  Q
    |||||||||  |||||||||||||||||| |||||||||||||    
T  28477455 agacaatttggtaatattaacacacaaaacagacacattaatt 28477413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 30476110 - 30476068
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  30476110 gacaatttcgtaatattaacacacaaaacagacacattaatta 30476068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 34055899 - 34055941
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||    
T  34055899 gacaatttcataatattaacacacaaaacagacatattaatta 34055941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 46435767 - 46435809
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  46435767 gacaatttggtaatattaacacacaaaacagacacattaatta 46435809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 11388189 - 11388148
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||  |||||||||||| ||||||||||||||||||||    
T  11388189 acaatttggtaatattaacacgcaaaatagacacattaatta 11388148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 15245087 - 15245010
Alignment:
Q  34 gaacctaggcaaaccagccatatgtataaactgcatgaaatgctggcgaagctctccaggaagaaccgctgaaatacc 111  Q
    ||||| ||||||||||||||||||||| |||||||   ||||  | |||||||||  ||||||||||| | |||||||    
T  15245087 gaaccaaggcaaaccagccatatgtattaactgcaaataatgacgacgaagctctttaggaagaaccgattaaatacc 15245010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 26998965 - 26998920
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaattata 157  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||||    
T  26998965 agacaatttcgtaatattaacaaacaaaatagatacattaattata 26998920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 48901554 - 48901595
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  |||||||||||||||||||||||| |||||||    
T  48901554 gacaatttagtaatattaacacacaaaatagacaaattaatt 48901595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 48903120 - 48903161
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  |||||||||||||||||||||||| |||||||    
T  48903120 gacaatttagtaatattaacacacaaaatagacaaattaatt 48903161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 11344617 - 11344585
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||| ||||||||||||||||||||||||||||    
T  11344617 taatgttaacacacaaaatagacacattaatta 11344585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 20945347 - 20945379
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    ||||||||||||| |||||||||||||||||||    
T  20945347 taatattaacacataaaatagacacattaatta 20945379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 25750586 - 25750554
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||| ||||||||    
T  25750586 taatattaacacacaaaatagacaaattaatta 25750554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 41308823 - 41308855
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||| ||||||||||||||    
T  41308823 taatattaacacacaaaacagacacattaatta 41308855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 41825184 - 41825216
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    ||||||||||||| |||||||||||||||||||    
T  41825184 taatattaacacataaaatagacacattaatta 41825216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 44083686 - 44083654
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||| ||||||||||    
T  44083686 taatattaacacacaaaatagatacattaatta 44083654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 38522 - 38557
Alignment:
Q  123 taatattaacacacaaaatagacacattaattatac 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  38522 taatattaacacacaaaatagacacattaattatac 38557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 37673808 - 37673765
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  37673808 agacaatttcataatattaacacacaaaacagacacattaatta 37673765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 20123520 - 20123478
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  20123520 gacaatttgataatattaacacacaaaacagacacattaatta 20123478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 25750438 - 25750396
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  25750438 gacaattttgtaatattaacacacaaaacagacacattaatta 25750396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 28663822 - 28663784
Alignment:
Q  116 aattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  28663822 aatttgataatattaacacacaaaatagacacattaatt 28663784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 31373733 - 31373774
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatt 154  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  31373733 gacaatttagtaatattaacacacaaaatagacacattaatt 31373774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 9598574 - 9598494
Alignment:
Q  30 aagagaacctaggcaaaccagccatatgtataaactgcatgaaatgctggcgaagctctccaggaagaaccgctgaaatac 110  Q
    ||||||| |||||||||||||| |||||  |||||||||| ||||| ||  ||||||| | | ||||||||| ||||||||    
T  9598574 aagagaatctaggcaaaccagctatatgagtaaactgcataaaatgatgatgaagctcccaatgaagaaccgatgaaatac 9598494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 9826145 - 9826065
Alignment:
Q  30 aagagaacctaggcaaaccagccatatgtataaactgcatgaaatgctggcgaagctctccaggaagaaccgctgaaatac 110  Q
    ||||||| |||||||||||||| |||||  |||||||||| ||||| ||  ||||||| | | ||||||||| ||||||||    
T  9826145 aagagaatctaggcaaaccagctatatgagtaaactgcataaaatgatgatgaagctcccaatgaagaaccgatgaaatac 9826065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 40211312 - 40211360
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaattatacaaa 161  Q
    ||||||||  |||||||||||||||||| |||||||||||||| |||||    
T  40211312 gacaatttcgtaatattaacacacaaaacagacacattaattacacaaa 40211360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 48193675 - 48193643
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||    
T  48193675 taatattaacacacaaaatagacacattaatta 48193643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 1324778 - 1324736
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| |||| |||||||||||||| ||||||||||||||    
T  1324778 gacaatttgataagattaacacacaaaacagacacattaatta 1324736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 21388312 - 21388270
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  21388312 gacaatttagtaatattaacacacaaaacagacacattaatta 21388270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 21801091 - 21801133
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  21801091 gacaatttagtaatattaacacacaaaacagacacattaatta 21801133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 35128454 - 35128412
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||    
T  35128454 gacaatttcataatattaacacacaaaacagacatattaatta 35128412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 48767634 - 48767592
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  48767634 gacaatttcgtaatattaacacacaaaacagacacattaatta 48767592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 4089545 - 4089577
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||| ||||||||||||||    
T  4089545 taatattaacacacaaaacagacacattaatta 4089577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 29636085 - 29636117
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||| ||||||||||||||    
T  29636085 taatattaacacacaaaacagacacattaatta 29636117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 40741010 - 40740978
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||| ||||||||    
T  40741010 taatattaacacacaaaatagacatattaatta 40740978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1091 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 1958 - 1990
Alignment:
Q  123 taatattaacacacaaaatagacacattaatta 155  Q
    |||||||||||||||||||||||||||||||||    
T  1958 taatattaacacacaaaatagacacattaatta 1990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 49206 - 49164
Alignment:
Q  113 gacaattttataatattaacacacaaaatagacacattaatta 155  Q
    |||||||| |||||||||||||||||| |||||| ||||||||    
T  49206 gacaatttaataatattaacacacaaagtagacatattaatta 49164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 23686 - 23727
Alignment:
Q  114 acaattttataatattaacacacaaaatagacacattaatta 155  Q
    ||||||| |||||||||||| |||||||| ||||||||||||    
T  23686 acaatttgataatattaacatacaaaataaacacattaatta 23727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 99851 - 99888
Alignment:
Q  112 agacaattttataatattaacacacaaaatagacacat 149  Q
    |||||||||  |||||||||||||||||||||||||||    
T  99851 agacaatttcgtaatattaacacacaaaatagacacat 99888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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