View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_60 (Length: 268)
Name: NF20076_high_60
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 48 - 258
Target Start/End: Complemental strand, 42635181 - 42634971
Alignment:
| Q |
48 |
tttcaaaaaatacgagtgctcaaaattgtgggtgtgaggaaggcttatgttgtagcgaacatggatattgtggtaacactgatccatattgtggcacagg |
147 |
Q |
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| T |
42635181 |
tttcaaaaaatacgagtgctcaaaattgtgggtgtgaggaaggcttatgttgtagcgaacatggatattgtggtaacactgatccatattgtggcacagg |
42635082 |
T |
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| Q |
148 |
gtgcaaacaaggtccttgttatgcgggccaaatttcacctagtactcctggtcctagcaatgatgtcaacgtggctgacattgttacacaagaattcttc |
247 |
Q |
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| T |
42635081 |
gtgcaaacaaggtccttgttatgcgggccaaatttcacctagtactcctggtcctagcaatgatgtcaacgtggctgacattgttacacaagaattcttc |
42634982 |
T |
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| Q |
248 |
aatagtataat |
258 |
Q |
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||||||||||| |
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| T |
42634981 |
aatagtataat |
42634971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 42629092 - 42628917
Alignment:
| Q |
1 |
catgtctatagcaaaacttgctataacctttcttattatgatcatggtttcaaaaaatacgagtgctcaaaattgtgggtgtgaggaaggcttatgttgt |
100 |
Q |
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| T |
42629092 |
catgtctatagcaaaacttgctatagccttttttattatgattatggttccaaaaagtattagtgctcaaaattgtgggtgtgaggaaggtttatgttgt |
42628993 |
T |
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| Q |
101 |
agcgaacatggatattgtggtaacactgatccatattgtggcacagggtgcaaacaaggtccttgttatgcgggcc |
176 |
Q |
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| T |
42628992 |
agccaatttgggtactgtggtaacactgatccatattgtggcacagggtgcaaacaaggtccttgttatgcaggcc |
42628917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 42640236 - 42640068
Alignment:
| Q |
11 |
gcaaaacttgctataacctttcttattatgatcatggtttcaaaaaatacgagtgctcaaaattgtgggtgtgaggaaggcttatgttgtagcgaacatg |
110 |
Q |
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| T |
42640236 |
gcaacacttgccatagccttttttattatgatcatggttccaaaaaatgttagtgctcaaaattgtgggtgtgctgaaggagtgtgttgcagccaatacg |
42640137 |
T |
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| Q |
111 |
gatattgtggtaacactgatccatattgtggcacagggtgcaaacaaggtccttgttatgcgggccaaa |
179 |
Q |
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| T |
42640136 |
ggtattgtggtaatggtgatgcatattgtggcacagggtgcaaacaaggtccttgttatgcaggccaaa |
42640068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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