View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20076_high_65 (Length: 249)
Name: NF20076_high_65
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_65 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 34397809 - 34397591
Alignment:
| Q |
15 |
agcacagataactcagattaaagacgtatccagtgtttagaatgtgacatagtcgacaacgagacacaatactgacacatgtatttacattcaatttttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34397809 |
agcacagataactcagattaaagacgtatccagtgtttagaatgtgacatagtcgacaacgaaacacaatactgacacatgtatttacattcaatttttg |
34397710 |
T |
|
| Q |
115 |
aaatattatcagtgttaatgtctgagcatccatgtcagtacttcatagcaagcaggtctttcgcatgtgtcataaatatttcaattacaagtaaattaca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34397709 |
aaatattatcagtgttaatgtctgagcatccatgtcagtacttcatagcaagcaggtctttcgcatgtgtcataaatatttcaattacaagtaaattaca |
34397610 |
T |
|
| Q |
215 |
tt-ttttcgtgttaatttt |
232 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
34397609 |
tttttttcgtgttaatttt |
34397591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 40583972 - 40584004
Alignment:
| Q |
77 |
gacacaatactgacacatgtatttacattcaat |
109 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
40583972 |
gacacaatactgacacatgtgtttacattcaat |
40584004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 112
Target Start/End: Original strand, 40876338 - 40876374
Alignment:
| Q |
77 |
gacacaatactgacacatgt-atttacattcaatttt |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40876338 |
gacacaatactgacacatgtgatttacattcaatttt |
40876374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University