View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_7 (Length: 502)
Name: NF20076_high_7
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 8e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 373 - 486
Target Start/End: Original strand, 42636027 - 42636140
Alignment:
| Q |
373 |
tgtgacttgtgattgtgaccatattgatttagcaacagtttacttctgtgagtgtgcatctaacaaatactccaactctttgttcattgtagagacctcc |
472 |
Q |
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| T |
42636027 |
tgtgacttgtgattgtgaccatattgatttagcaacagtttccttctgtgagtgtgcatctaacaaatactccaattctttgttcattgtagagacctcc |
42636126 |
T |
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| Q |
473 |
taagccaagaaatt |
486 |
Q |
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| T |
42636127 |
taagccaagaaatt |
42636140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 42635691 - 42635774
Alignment:
| Q |
10 |
attatactatataatgccaagagctgaaattactttagtttctctagcatttttgtcagtgagttatttcctattcctagcatg |
93 |
Q |
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| T |
42635691 |
attatactatataatgccaagagctgaaattactttagtttctctagcatttttgtcagtgagttatttcctattcctagcatg |
42635774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 42635832 - 42635907
Alignment:
| Q |
151 |
ggatgcactgcttgtaagtgaatattcttcacaggcttttgttagtttgttgcatagcacgattttccatttttgt |
226 |
Q |
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| T |
42635832 |
ggatgcactgcttgtaagtgaatattcttcacaggcttttgttagtttgttgcatagcacgattttccatttttgt |
42635907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 42635975 - 42636022
Alignment:
| Q |
294 |
ttcagagaatcttaagaaatgaaggtgtttgaggtgaaacatcactac |
341 |
Q |
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| T |
42635975 |
ttcagagaatcttaagaaatgaaggtgtttgaggtgaaacatcactac |
42636022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 44095853 - 44095799
Alignment:
| Q |
39 |
ttactttagtttctctagcatttttgtcagtgagttatttcctattcctagcatg |
93 |
Q |
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| T |
44095853 |
ttactttagtttctctagaatttttgtcagaaggttatttcctattcctagcatg |
44095799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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