View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20076_high_79 (Length: 219)
Name: NF20076_high_79
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_79 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 43561057 - 43560872
Alignment:
| Q |
21 |
acatcaggagtgtgtattatgcaagtgtttggtgcaaatcctacttcgacaacctcacagcttagggtctatgatggttcattaaattattataggggtc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43561057 |
acatcaggagtgtgtattatgcaagtgtttggtgcaaatcctacttcgacaacctcacagcttagggtctatgatggttcattaaattattatagggatc |
43560958 |
T |
|
| Q |
121 |
ctgttctgtctccaaatatctataataggtggttcaaggtgaacgttattcataatgtgggtggtaacaatgttaaggtttatatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43560957 |
ctgttctgtctccaaatatctataataggtggttcaaggtgaacgttattcataatgtgggtgctaacaatgttaaggtttatatt |
43560872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University