View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20076_high_81 (Length: 216)

Name: NF20076_high_81
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20076_high_81
NF20076_high_81
[»] scaffold1320 (2 HSPs)
scaffold1320 (1-151)||(1582-1732)
scaffold1320 (166-216)||(1753-1803)
[»] chr8 (23 HSPs)
chr8 (1-151)||(15078986-15079136)
chr8 (1-151)||(15167138-15167288)
chr8 (1-138)||(15163312-15163444)
chr8 (176-209)||(3456825-3456858)
chr8 (167-216)||(15079147-15079196)
chr8 (172-216)||(7968940-7968984)
chr8 (166-214)||(8837939-8837987)
chr8 (166-216)||(4830025-4830076)
chr8 (166-216)||(15167067-15167117)
chr8 (166-211)||(21557455-21557501)
chr8 (166-207)||(28580970-28581012)
chr8 (166-216)||(37570747-37570797)
chr8 (166-211)||(7987723-7987768)
chr8 (173-213)||(12714370-12714411)
chr8 (166-210)||(27571842-27571887)
chr8 (182-211)||(32115416-32115445)
chr8 (167-216)||(36588089-36588138)
chr8 (166-210)||(44632178-44632223)
chr8 (167-210)||(7147206-7147250)
chr8 (166-209)||(18422446-18422490)
chr8 (188-216)||(31511988-31512016)
chr8 (180-216)||(35682700-35682736)
chr8 (176-216)||(40919363-40919403)
[»] chr2 (16 HSPs)
chr2 (166-216)||(3197073-3197123)
chr2 (169-216)||(10991559-10991606)
chr2 (166-216)||(25395435-25395486)
chr2 (166-216)||(31815880-31815931)
chr2 (171-216)||(11560515-11560561)
chr2 (171-216)||(20120719-20120765)
chr2 (166-216)||(22267530-22267580)
chr2 (182-216)||(41542993-41543027)
chr2 (183-216)||(2429033-2429066)
chr2 (182-211)||(4238781-4238810)
chr2 (166-214)||(25603904-25603953)
chr2 (174-207)||(41682389-41682422)
chr2 (183-216)||(44488021-44488054)
chr2 (166-209)||(3196584-3196628)
chr2 (166-209)||(24581010-24581054)
chr2 (167-214)||(27244676-27244724)
[»] chr1 (17 HSPs)
chr1 (166-216)||(6219856-6219906)
chr1 (166-216)||(27533260-27533311)
chr1 (167-216)||(3573319-3573368)
chr1 (166-210)||(13401620-13401665)
chr1 (167-216)||(41926839-41926888)
chr1 (176-216)||(30548095-30548135)
chr1 (166-216)||(29042554-29042605)
chr1 (185-216)||(30678826-30678857)
chr1 (170-216)||(33153877-33153924)
chr1 (179-214)||(48639021-48639056)
chr1 (166-211)||(17917131-17917177)
chr1 (166-211)||(43356457-43356503)
chr1 (175-215)||(21341202-21341243)
chr1 (176-216)||(25165095-25165136)
chr1 (176-209)||(27023659-27023692)
chr1 (182-210)||(28257736-28257764)
chr1 (166-202)||(42267231-42267267)
[»] chr6 (11 HSPs)
chr6 (166-210)||(32409172-32409216)
chr6 (171-210)||(25023649-25023688)
chr6 (166-211)||(24623310-24623356)
chr6 (166-209)||(15169955-15169999)
chr6 (166-209)||(15178727-15178771)
chr6 (166-216)||(788883-788934)
chr6 (166-216)||(8575570-8575620)
chr6 (166-216)||(11456369-11456419)
chr6 (182-216)||(16390446-16390480)
chr6 (176-216)||(4826307-4826348)
chr6 (166-214)||(14610000-14610048)
[»] chr7 (17 HSPs)
chr7 (166-212)||(7388032-7388079)
chr7 (179-216)||(21411536-21411573)
chr7 (176-216)||(3953458-3953498)
chr7 (176-215)||(25128951-25128990)
chr7 (166-216)||(27833394-27833445)
chr7 (166-216)||(21136848-21136898)
chr7 (166-216)||(35001124-35001174)
chr7 (166-211)||(37325977-37326023)
chr7 (166-211)||(42227798-42227844)
chr7 (166-211)||(44868148-44868194)
chr7 (176-216)||(23221409-23221450)
chr7 (182-211)||(36755036-36755065)
chr7 (182-211)||(36760833-36760862)
chr7 (187-216)||(40187651-40187680)
chr7 (166-207)||(44717389-44717430)
chr7 (166-209)||(3536247-3536291)
chr7 (172-216)||(16355530-16355574)
[»] chr5 (17 HSPs)
chr5 (166-216)||(19647501-19647552)
chr5 (166-211)||(29695037-29695083)
chr5 (172-210)||(43135193-43135231)
chr5 (166-211)||(20125048-20125093)
chr5 (166-216)||(15889428-15889479)
chr5 (166-216)||(37054262-37054313)
chr5 (166-216)||(11720911-11720961)
chr5 (166-216)||(39914918-39914968)
chr5 (186-215)||(8682408-8682437)
chr5 (171-216)||(21316899-21316944)
chr5 (186-215)||(21657412-21657441)
chr5 (179-216)||(24485716-24485753)
chr5 (182-211)||(39963515-39963544)
chr5 (187-215)||(1512873-1512901)
chr5 (176-204)||(21052998-21053026)
chr5 (184-216)||(27651542-27651574)
chr5 (182-214)||(41630122-41630154)
[»] chr3 (20 HSPs)
chr3 (166-216)||(7464484-7464535)
chr3 (166-216)||(5534695-5534745)
chr3 (171-211)||(42269320-42269360)
chr3 (176-216)||(43777060-43777100)
chr3 (166-209)||(45334213-45334257)
chr3 (166-216)||(16980347-16980398)
chr3 (166-209)||(23332674-23332717)
chr3 (166-216)||(4564626-4564676)
chr3 (166-211)||(25727960-25728006)
chr3 (166-215)||(34899115-34899165)
chr3 (183-216)||(12408195-12408228)
chr3 (166-214)||(17755140-17755189)
chr3 (166-214)||(19056460-19056509)
chr3 (166-210)||(24521671-24521716)
chr3 (183-216)||(26973378-26973411)
chr3 (183-216)||(36690029-36690062)
chr3 (179-216)||(46226084-46226121)
chr3 (182-210)||(22843487-22843515)
chr3 (167-207)||(49223021-49223061)
chr3 (188-216)||(55494706-55494734)
[»] chr4 (18 HSPs)
chr4 (166-216)||(17656787-17656837)
chr4 (166-211)||(21649300-21649346)
chr4 (166-211)||(48159699-48159745)
chr4 (166-216)||(21318246-21318297)
chr4 (166-216)||(22164262-22164313)
chr4 (182-216)||(22411781-22411815)
chr4 (182-216)||(36071161-36071195)
chr4 (187-216)||(23160057-23160086)
chr4 (168-216)||(36479008-36479057)
chr4 (166-211)||(37462133-37462178)
chr4 (171-211)||(50650925-50650966)
chr4 (176-216)||(2587704-2587744)
chr4 (176-216)||(6586158-6586198)
chr4 (166-209)||(17948129-17948173)
chr4 (176-216)||(29228747-29228787)
chr4 (170-209)||(37005516-37005556)
chr4 (166-209)||(50380829-50380873)
chr4 (176-211)||(56096226-56096262)
[»] scaffold1063 (1 HSPs)
scaffold1063 (187-215)||(1075-1103)
[»] scaffold0011 (1 HSPs)
scaffold0011 (182-210)||(189982-190010)


Alignment Details
Target: scaffold1320 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 1582 - 1732
Alignment:
Q  1 tcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaattt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1582 tcatcatcagcttcttgcaacttcaaccagtcctctgaaaaagttacaagaaataaatacaaattgcaattcagttccagaaaacattttcttttaattt 1681  T
Q  101 cgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 151  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  1682 cgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 1732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 1753 - 1803
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||||| |||||||  ||||||||||||||| ||||||    
T  1753 gtggtcggggtttgaaccctaaccttatgtatattatgcattgttcctacc 1803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 15078986 - 15079136
Alignment:
Q  1 tcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  15078986 tcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaatttgcaattcagttccagaaaacattttcttttaattt 15079085  T
Q  101 cgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 151  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15079086 cgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 15079136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 15167288 - 15167138
Alignment:
Q  1 tcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaattt 100  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15167288 tcatcattagcttcttgcaacttcaaccagtcctctgaaaaagttacaagaaataaatacaaattgcaattcagttccagaaaacattttcttttaattt 15167189  T
Q  101 cgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 151  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15167188 cgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 15167138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 15163444 - 15163312
Alignment:
Q  1 tcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaattt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||  |||||||||||||    
T  15163444 tcatcatcagcttcttgcaacttcaaccagtcctctgaaaaagttaaaagaaataaatac-aattgcaattcagttccagaaaac--tttcttttaattt 15163348  T
Q  101 cgtgttttaactaatagttataaattgtaaaaatatca 138  Q
    | |||||| ||||||| |  ||||| ||||||||||||    
T  15163347 catgttttcactaataat--taaatcgtaaaaatatca 15163312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 3456825 - 3456858
Alignment:
Q  176 tttgaacccgaaccttacatatattatgcattgt 209  Q
    ||||||||||||||||||||||||||||||||||    
T  3456825 tttgaacccgaaccttacatatattatgcattgt 3456858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 15079147 - 15079196
Alignment:
Q  167 tggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||| |  |||||| ||||||||||||||||||||||||    
T  15079147 tggtcgggatttgaatctaaaccttgcatatattatgcattgtccctacc 15079196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 7968940 - 7968984
Alignment:
Q  172 gggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||||    
T  7968940 gggatttgaacccggaccttgcatatattatgcattgtccttacc 7968984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 8837987 - 8837939
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcccta 214  Q
    |||||||| ||||||||||| |||||  |||||||||||||||||||||    
T  8837987 gtggtcggaatttgaacccggaccttgtatatattatgcattgtcccta 8837939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 4830076 - 4830025
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||||| ||||    
T  4830076 gtggtcgggattcgaaccccgaaccttgcatatattatgcattgtccatacc 4830025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 15167117 - 15167067
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||||| |||||||  ||||||||||||||| ||||||    
T  15167117 gtggtcggggtttgaaccctaaccttatgtatattatgcattgttcctacc 15167067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 21557501 - 21557455
Alignment:
Q  166 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 211  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||    
T  21557501 gtggtcgggattcgaacctcggaccttacatatattatgcattgtcc 21557455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 28581012 - 28580970
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcatt 207  Q
    ||||||||||||||||||| ||||||||||||| |||||||||    
T  28581012 gtggtcgggatttgaaccccgaaccttacatattttatgcatt 28580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 37570747 - 37570797
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||||| |||||||||||| ||||| ||||||| ||||    
T  37570747 gtggtcggggtttgaaccccaaccttacatatgttatgtattgtccatacc 37570797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 7987723 - 7987768
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 211  Q
    |||||||| ||||||||||| ||||| ||||||||||| |||||||    
T  7987723 gtggtcggaatttgaacccggaccttgcatatattatgtattgtcc 7987768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 12714370 - 12714411
Alignment:
Q  173 ggatttgaaccc-gaaccttacatatattatgcattgtccct 213  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  12714370 ggatttgaaccccgaaccttgcatatattatgcattgtccct 12714411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 27571842 - 27571887
Alignment:
Q  166 gtggtcgggatttgaacccgaa-ccttacatatattatgcattgtc 210  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||    
T  27571842 gtggtcgggatttgaaccccaaaccttgcatatattatgcattgtc 27571887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 211
Target Start/End: Original strand, 32115416 - 32115445
Alignment:
Q  182 cccgaaccttacatatattatgcattgtcc 211  Q
    ||||||||||||||||||||||||||||||    
T  32115416 cccgaaccttacatatattatgcattgtcc 32115445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 36588089 - 36588138
Alignment:
Q  167 tggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||| ||||| | ||||||||||||||||||| |||||| ||||||    
T  36588089 tggtcggggtttgatcacgaaccttacatatattatacattgttcctacc 36588138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 44632178 - 44632223
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 210  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||||    
T  44632178 gtggtcggggtttgaaccccgaaccttatatatattatgcattgtc 44632223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 7147206 - 7147250
Alignment:
Q  167 tggtcgggatttgaacc-cgaaccttacatatattatgcattgtc 210  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||    
T  7147206 tggtcggggtttgaaccacgaaccttacatatattatacattgtc 7147250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 18422446 - 18422490
Alignment:
Q  166 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 209  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||    
T  18422446 gtggttggggtttgaatcccgaaccttacatatattatgcattgt 18422490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 31512016 - 31511988
Alignment:
Q  188 ccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||||||||||||||||    
T  31512016 ccttacatatattatgcattgtccctacc 31511988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 35682700 - 35682736
Alignment:
Q  180 aacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  35682700 aacccgaaccttacatatattatggattgtccgtacc 35682736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 40919363 - 40919403
Alignment:
Q  176 tttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||| ||||| ||||||||||||||||| ||||||    
T  40919363 tttgaacccggaccttgcatatattatgcattgttcctacc 40919403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 3197073 - 3197123
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  3197073 gtggtcggggtttgaatccgaaccttgcatatattatgcattgtccctacc 3197123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 10991606 - 10991559
Alignment:
Q  169 gtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||| ||||    
T  10991606 gtcgggattcgaacccggaccttacatatattatgtattgtccttacc 10991559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 25395435 - 25395486
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||| ||||||    
T  25395435 gtggtcgggatttgaaccttgaaccttgcatatattatgcattgttcctacc 25395486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 31815880 - 31815931
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||||| | ||||| ||||||||||||||||||||||||    
T  31815880 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctacc 31815931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 11560561 - 11560515
Alignment:
Q  171 cgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||    
T  11560561 cggggtttgaaccctgaaccttgcatatattatgcattgtccctacc 11560515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 20120719 - 20120765
Alignment:
Q  171 cgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  20120719 cgggatttgaaccccgaaccttgcatatattatgcattgtccttacc 20120765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 22267580 - 22267530
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||| | |||||| ||||||||||||||||||| ||||    
T  22267580 gtggtcggggtttgaactcaaaccttgcatatattatgcattgtccgtacc 22267530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 41542993 - 41543027
Alignment:
Q  182 cccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||||||||||||||||| ||||    
T  41542993 cccgaaccttacatatattatgcattgtccatacc 41543027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 2429066 - 2429033
Alignment:
Q  183 ccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||||||||||||| ||||    
T  2429066 ccgaaccttacatatattatgcattgtccttacc 2429033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 4238810 - 4238781
Alignment:
Q  182 cccgaaccttacatatattatgcattgtcc 211  Q
    ||||||||||||||||||||||||||||||    
T  4238810 cccgaaccttacatatattatgcattgtcc 4238781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 25603904 - 25603953
Alignment:
Q  166 gtggtcgggatttgaacccgaa-ccttacatatattatgcattgtcccta 214  Q
    |||||| |||||||||||| || ||||| |||||||||||||||||||||    
T  25603904 gtggtcaggatttgaaccccaaaccttatatatattatgcattgtcccta 25603953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 41682389 - 41682422
Alignment:
Q  174 gatttgaacccgaaccttacatatattatgcatt 207  Q
    ||||||||||| ||||||||||||||||||||||    
T  41682389 gatttgaaccctaaccttacatatattatgcatt 41682422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 44488021 - 44488054
Alignment:
Q  183 ccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||||||||||||| ||||    
T  44488021 ccgaaccttacatatattatgcattgtccttacc 44488054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 3196628 - 3196584
Alignment:
Q  166 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 209  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||    
T  3196628 gtggtcgagatttgaatctcgaaccttacatatattatgcattgt 3196584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 24581010 - 24581054
Alignment:
Q  166 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 209  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||    
T  24581010 gtggtcggggtttgaacctcgaaccttgcatatattatgcattgt 24581054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 27244724 - 27244676
Alignment:
Q  167 tggtcgggatttgaacccga-accttacatatattatgcattgtcccta 214  Q
    |||||||| ||||||||| | ||||| ||||||||||||||||||||||    
T  27244724 tggtcgggctttgaaccctagaccttgcatatattatgcattgtcccta 27244676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 6219856 - 6219906
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  6219856 gtggtcaggatttgaacccggaccttacatatattatgtattgtccctacc 6219906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 27533311 - 27533260
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||    
T  27533311 gtggtcggggtttgaaccccgaaccttgcatatattatgcattgtccctacc 27533260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 3573319 - 3573368
Alignment:
Q  167 tggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||| ||| | |||||||||||||||||||||||| ||||||    
T  3573319 tggtcgggatttaaactcaaaccttacatatattatgcattgttcctacc 3573368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 13401665 - 13401620
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 210  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  13401665 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtc 13401620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 41926888 - 41926839
Alignment:
Q  167 tggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||| ||||    
T  41926888 tggtcggaattcgaacccggaccttacatatattatgcattgtccttacc 41926839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 30548095 - 30548135
Alignment:
Q  176 tttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  30548095 tttgaacccgaaccttgcatatattatgcattgtccttacc 30548135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 29042605 - 29042554
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||| | | ||||||||||||||||||| ||||||||    
T  29042605 gtggtcgggatttgaaccccggatcttacatatattatgcattatccctacc 29042554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 30678826 - 30678857
Alignment:
Q  185 gaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||||||||||||||||    
T  30678826 gaaccttacatatattatgcattgtccctacc 30678857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 33153877 - 33153924
Alignment:
Q  170 tcgggatttgaacc-cgaaccttacatatattatgcattgtccctacc 216  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||||    
T  33153877 tcggggtttgaacctcggaccttacatatattatgcattgtccctacc 33153924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 48639021 - 48639056
Alignment:
Q  179 gaacccgaaccttacatatattatgcattgtcccta 214  Q
    |||||| |||||||||||||||||||||||||||||    
T  48639021 gaacccaaaccttacatatattatgcattgtcccta 48639056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 17917131 - 17917177
Alignment:
Q  166 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtcc 211  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||||    
T  17917131 gtggtcggggtttgaatcccgaaccttacatattttatgcattgtcc 17917177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 43356503 - 43356457
Alignment:
Q  166 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtcc 211  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||||    
T  43356503 gtggtcggggtttgaactccaaaccttacatatattatgcattgtcc 43356457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 21341243 - 21341202
Alignment:
Q  175 atttgaacc-cgaaccttacatatattatgcattgtccctac 215  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  21341243 atttgaacctcgaaccttgcatatattatgcattgtccctac 21341202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 25165095 - 25165136
Alignment:
Q  176 tttgaacccga-accttacatatattatgcattgtccctacc 216  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  25165095 tttgaacccgagaccttacatatattatgcattgtccatacc 25165136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 27023659 - 27023692
Alignment:
Q  176 tttgaacccgaaccttacatatattatgcattgt 209  Q
    |||||||||||||||| |||||||||||||||||    
T  27023659 tttgaacccgaaccttgcatatattatgcattgt 27023692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 28257764 - 28257736
Alignment:
Q  182 cccgaaccttacatatattatgcattgtc 210  Q
    |||||||||||||||||||||||||||||    
T  28257764 cccgaaccttacatatattatgcattgtc 28257736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 42267267 - 42267231
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattat 202  Q
    |||||||||||||||||| | ||||||||||||||||    
T  42267267 gtggtcgggatttgaacctggaccttacatatattat 42267231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 32409172 - 32409216
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 210  Q
    ||||||| | |||||||||||||||||||||||||||||||||||    
T  32409172 gtggtcgaggtttgaacccgaaccttacatatattatgcattgtc 32409216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 25023688 - 25023649
Alignment:
Q  171 cgggatttgaacccgaaccttacatatattatgcattgtc 210  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  25023688 cgggatttgaacccgaactttacatatattatgcattgtc 25023649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 24623310 - 24623356
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 211  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  24623310 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtcc 24623356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 15169999 - 15169955
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 209  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15169999 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15169955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 15178771 - 15178727
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 209  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15178771 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 788934 - 788883
Alignment:
Q  166 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||    
T  788934 gtggtcggggtttgaactccgaaccttgcatatattatgcattgtccttacc 788883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 8575570 - 8575620
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||| ||||||| ||| |||||| | ||||||||||||||||||||||||    
T  8575570 gtggttgggattttaactcgaaccatgcatatattatgcattgtccctacc 8575620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 11456369 - 11456419
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||| |||| |||||||||  ||||||||||||||||||||||||| ||||    
T  11456369 gtggccggggtttgaaccccgaccttacatatattatgcattgtccatacc 11456419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 16390480 - 16390446
Alignment:
Q  182 cccgaaccttacatatattatgcattgtccctacc 216  Q
    |||| ||||||||||||||||||||||||||||||    
T  16390480 cccggaccttacatatattatgcattgtccctacc 16390446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 4826348 - 4826307
Alignment:
Q  176 tttgaacc-cgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  4826348 tttgaacctcgaaccttacatatattatgcattgtctctacc 4826307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 14610048 - 14610000
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcccta 214  Q
    |||| |||| |||||||||| ||||||||||||||||  ||||||||||    
T  14610048 gtggccggggtttgaacccggaccttacatatattatagattgtcccta 14610000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 7388032 - 7388079
Alignment:
Q  166 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtccc 212  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  7388032 gtggtcggggtttgaatcccgaaccttacatatattatgcattgtccc 7388079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 21411573 - 21411536
Alignment:
Q  179 gaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||| |||||||||||||||||||||||||||    
T  21411573 gaacccgaactttacatatattatgcattgtccctacc 21411536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 3953498 - 3953458
Alignment:
Q  176 tttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  3953498 tttgaacccgaaccttgcatatattatgcattgtccatacc 3953458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 25128951 - 25128990
Alignment:
Q  176 tttgaacccgaaccttacatatattatgcattgtccctac 215  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  25128951 tttgaacccgaaccttgcatatattatacattgtccctac 25128990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 27833394 - 27833445
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||| ||||    
T  27833394 gtggtcggggtttgaaccccggaccttacatatattatgcattgtccttacc 27833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 21136898 - 21136848
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||  |||||| |||||||||| |||||||| ||||    
T  21136898 gtggtcgggatttgaacctcaaccttgcatatattatacattgtccatacc 21136848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 35001124 - 35001174
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||| | ||||||| ||||||||||||||||| |||||    
T  35001124 gtggtcggggtttgaactcaaaccttaaatatattatgcattgtctctacc 35001174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 37325977 - 37326023
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatatt-atgcattgtcc 211  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||    
T  37325977 gtggccggggtttgaacccgaaccttacatatattaatgcattgtcc 37326023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 42227798 - 42227844
Alignment:
Q  166 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 211  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||    
T  42227798 gtggtcggagtttgaacctcgaaccttacatatattatgcattgtcc 42227844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 44868148 - 44868194
Alignment:
Q  166 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 211  Q
    |||||||| ||||||||| || |||||||||||||||||||||||||    
T  44868148 gtggtcggaatttgaacctcggaccttacatatattatgcattgtcc 44868194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 23221450 - 23221409
Alignment:
Q  176 tttgaacc-cgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  23221450 tttgaaccacgaaccttacatatattatgcattgtctctacc 23221409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 36755065 - 36755036
Alignment:
Q  182 cccgaaccttacatatattatgcattgtcc 211  Q
    ||||||||||||||||||||||||||||||    
T  36755065 cccgaaccttacatatattatgcattgtcc 36755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 36760862 - 36760833
Alignment:
Q  182 cccgaaccttacatatattatgcattgtcc 211  Q
    ||||||||||||||||||||||||||||||    
T  36760862 cccgaaccttacatatattatgcattgtcc 36760833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 216
Target Start/End: Original strand, 40187651 - 40187680
Alignment:
Q  187 accttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||||||||||||||    
T  40187651 accttacatatattatgcattgtccctacc 40187680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 44717430 - 44717389
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcatt 207  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  44717430 gtggtcgggatttgaactcgaatcttacatatattatacatt 44717389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 3536247 - 3536291
Alignment:
Q  166 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 209  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||    
T  3536247 gtggtcggagtttgaatcccgaaccttacatatattatgcattgt 3536291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 16355574 - 16355530
Alignment:
Q  172 gggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||| ||||||||||||||||| || |||| |||||    
T  16355574 gggatttgaaccccaaccttacatatattatacaatgtctctacc 16355530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 19647501 - 19647552
Alignment:
Q  166 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  19647501 gtggtcgggatttgaaccccagaccttacatatattatacattgtccctacc 19647552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 29695083 - 29695037
Alignment:
Q  166 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 211  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  29695083 gtggtcggggtttgaaccacgaaccttacatatattatgcattgtcc 29695037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 43135193 - 43135231
Alignment:
Q  172 gggatttgaacccgaaccttacatatattatgcattgtc 210  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43135193 gggatttgaacccggaccttacatatattatgcattgtc 43135231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 20125093 - 20125048
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 211  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||    
T  20125093 gtggtcggagtttgaacccgaaccttgcatatattatgcattgtcc 20125048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 15889479 - 15889428
Alignment:
Q  166 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||||| | ||||| ||||||||||||||||||||||||    
T  15889479 gtggtcggggtttgaaccctagaccttgcatatattatgcattgtccctacc 15889428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 37054262 - 37054313
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||  ||||||||| |||||||| |||||||||||||||||||||||    
T  37054262 gtggtcggagtttgaaccccgaaccttatatatattatgcattgtccctacc 37054313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 11720961 - 11720911
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||| |||| |||||||||  ||||| ||||||||||||||||||||||||    
T  11720961 gtggccggggtttgaaccccgaccttgcatatattatgcattgtccctacc 11720911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 39914968 - 39914918
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| || ||||||| ||||| ||||||||||||||||||| ||||    
T  39914968 gtggtcggggttcgaacccggaccttgcatatattatgcattgtccttacc 39914918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 8682408 - 8682437
Alignment:
Q  186 aaccttacatatattatgcattgtccctac 215  Q
    ||||||||||||||||||||||||||||||    
T  8682408 aaccttacatatattatgcattgtccctac 8682437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 21316944 - 21316899
Alignment:
Q  171 cgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||| |||||||||| ||||| ||||||||||||||||||| ||||    
T  21316944 cggggtttgaacccggacctttcatatattatgcattgtccttacc 21316899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 21657412 - 21657441
Alignment:
Q  186 aaccttacatatattatgcattgtccctac 215  Q
    ||||||||||||||||||||||||||||||    
T  21657412 aaccttacatatattatgcattgtccctac 21657441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 24485753 - 24485716
Alignment:
Q  179 gaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  24485753 gaacccgaaccttgcatatattatgcattgtccatacc 24485716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 39963544 - 39963515
Alignment:
Q  182 cccgaaccttacatatattatgcattgtcc 211  Q
    ||||||||||||||||||||||||||||||    
T  39963544 cccgaaccttacatatattatgcattgtcc 39963515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 1512901 - 1512873
Alignment:
Q  187 accttacatatattatgcattgtccctac 215  Q
    |||||||||||||||||||||||||||||    
T  1512901 accttacatatattatgcattgtccctac 1512873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 21053026 - 21052998
Alignment:
Q  176 tttgaacccgaaccttacatatattatgc 204  Q
    |||||||||||||||||||||||||||||    
T  21053026 tttgaacccgaaccttacatatattatgc 21052998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 27651542 - 27651574
Alignment:
Q  184 cgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||||||||||||||| ||||    
T  27651542 cgaaccttacatatattatgcattgtccttacc 27651574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 41630122 - 41630154
Alignment:
Q  182 cccgaaccttacatatattatgcattgtcccta 214  Q
    |||||||||| ||||||||||||||||||||||    
T  41630122 cccgaaccttgcatatattatgcattgtcccta 41630154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 7464484 - 7464535
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  7464484 gtggtcggggtttgaaccccggaccttacatatattatgcattgtccctacc 7464535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 5534695 - 5534745
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||| ||||    
T  5534695 gtggtcgggatttgaacccgaaccttgcatattttacgcattgtccatacc 5534745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 42269360 - 42269320
Alignment:
Q  171 cgggatttgaacccgaaccttacatatattatgcattgtcc 211  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  42269360 cggggtttgaactcgaaccttacatatattatgcattgtcc 42269320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 43777060 - 43777100
Alignment:
Q  176 tttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  43777060 tttgaacccgaaccttgcatatattatgcatggtccctacc 43777100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 45334257 - 45334213
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 209  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  45334257 gtggtcgggatttgaaccccgaaccttgcatatattatgcattgt 45334213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 16980347 - 16980398
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||| ||||    
T  16980347 gtggtcgggatttgaaccatgaaccttgcatatattatgcattgtccttacc 16980398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 23332717 - 23332674
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 209  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||    
T  23332717 gtggtcggggtttgaaccagaaccatacatatattatgcattgt 23332674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 4564676 - 4564626
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||| ||| |||| ||| ||||| ||||||||||||||||||||||||    
T  4564676 gtggtcgagatatgaatccggaccttgcatatattatgcattgtccctacc 4564626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 25727960 - 25728006
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 211  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||    
T  25727960 gtggtcgggatttgaaccccggaccttgcatatattatgcattgtcc 25728006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 34899165 - 34899115
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctac 215  Q
    ||||||||| ||||||||| | ||||| |||||||||||||||||||||||    
T  34899165 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctac 34899115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 12408228 - 12408195
Alignment:
Q  183 ccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||| |||||||||||||||||||||||||||    
T  12408228 ccgaactttacatatattatgcattgtccctacc 12408195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 17755189 - 17755140
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcccta 214  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||| ||||    
T  17755189 gtggtcggaatttgaaccccgaaccttacatatattatgtattgttccta 17755140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 19056509 - 19056460
Alignment:
Q  166 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcccta 214  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||| ||||    
T  19056509 gtggtcggaatttgaaccccgaaccttacatatattatgtattgttccta 19056460  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 24521716 - 24521671
Alignment:
Q  166 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtc 210  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  24521716 gtggtcgagatttgaactccgaaccttacatattttatgcattgtc 24521671  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 26973411 - 26973378
Alignment:
Q  183 ccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||||||||||||| ||||    
T  26973411 ccgaaccttacatatattatgcattgtccttacc 26973378  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 36690062 - 36690029
Alignment:
Q  183 ccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||||||||||| ||||||    
T  36690062 ccgaaccttacatatattatgcattgttcctacc 36690029  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 46226084 - 46226121
Alignment:
Q  179 gaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  46226084 gaacccggaccttgcatatattatgcattgtccctacc 46226121  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 22843515 - 22843487
Alignment:
Q  182 cccgaaccttacatatattatgcattgtc 210  Q
    |||||||||||||||||||||||||||||    
T  22843515 cccgaaccttacatatattatgcattgtc 22843487  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 49223021 - 49223061
Alignment:
Q  167 tggtcgggatttgaacccgaaccttacatatattatgcatt 207  Q
    ||||||||||| |||||| |||||| |||||||||||||||    
T  49223021 tggtcgggattcgaaccccaaccttgcatatattatgcatt 49223061  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 55494734 - 55494706
Alignment:
Q  188 ccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||||||||||||||||    
T  55494734 ccttacatatattatgcattgtccctacc 55494706  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 17656787 - 17656837
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  17656787 gtggccgggattcgaacctgaaccttacatatattatgcattgtccatacc 17656837  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 21649346 - 21649300
Alignment:
Q  166 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtcc 211  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  21649346 gtggtcgggatttgaagcccgatccttacatatattatgcattgtcc 21649300  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 48159745 - 48159699
Alignment:
Q  166 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 211  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  48159745 gtggtcgggatttgaacttcgaaccttacatatattatgcattgtcc 48159699  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 21318246 - 21318297
Alignment:
Q  166 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||||| | ||||| ||||||||||||||||||||||||    
T  21318246 gtggtcggggtttgaaccctagaccttgcatatattatgcattgtccctacc 21318297  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 22164262 - 22164313
Alignment:
Q  166 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||| ||||||    
T  22164262 gtggtcggggtttgaaccccagaccttacatatattatgcattgttcctacc 22164313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 22411815 - 22411781
Alignment:
Q  182 cccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||||||||||||||||| ||||    
T  22411815 cccgaaccttacatatattatgcattgtccatacc 22411781  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 36071195 - 36071161
Alignment:
Q  182 cccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||||||||||||||||| ||||    
T  36071195 cccgaaccttacatatattatgcattgtccttacc 36071161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 23160086 - 23160057
Alignment:
Q  187 accttacatatattatgcattgtccctacc 216  Q
    ||||||||||||||||||||||||||||||    
T  23160086 accttacatatattatgcattgtccctacc 23160057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 36479057 - 36479008
Alignment:
Q  168 ggtcgggatttgaacc-cgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||| || ||||| |||||||||||||||||||||||||||| ||||    
T  36479057 ggtcggggttcgaacctcgaaccttacatatattatgcattgtccatacc 36479008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 37462178 - 37462133
Alignment:
Q  166 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 211  Q
    ||||||||| || ||| ||| |||||||||||||||||||||||||    
T  37462178 gtggtcggggttggaatccggaccttacatatattatgcattgtcc 37462133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 50650925 - 50650966
Alignment:
Q  171 cgggatttgaaccc-gaaccttacatatattatgcattgtcc 211  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  50650925 cgggattcgaaccctgaaccttacatatattatgcattgtcc 50650966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 2587704 - 2587744
Alignment:
Q  176 tttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||| ||||||||||||||||||||| ||| ||||    
T  2587704 tttgaacccggaccttacatatattatgcattatccatacc 2587744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 6586198 - 6586158
Alignment:
Q  176 tttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  6586198 tttgaacccgaaccttccatatactatgcattgttcctacc 6586158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 17948129 - 17948173
Alignment:
Q  166 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 209  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||    
T  17948129 gtggtcggggtttgaactccgaaccttacatattttatgcattgt 17948173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 29228787 - 29228747
Alignment:
Q  176 tttgaacccgaaccttacatatattatgcattgtccctacc 216  Q
    ||||||||| ||| |||||||||||||| ||||||||||||    
T  29228787 tttgaacccaaactttacatatattatggattgtccctacc 29228747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 37005516 - 37005556
Alignment:
Q  170 tcgggatttgaaccc-gaaccttacatatattatgcattgt 209  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  37005516 tcgggattcgaaccctgaaccttacatatattatgcattgt 37005556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 50380829 - 50380873
Alignment:
Q  166 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 209  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||    
T  50380829 gtggtcgagatttgaactccggaccttacatatattatgcattgt 50380873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 56096262 - 56096226
Alignment:
Q  176 tttgaacc-cgaaccttacatatattatgcattgtcc 211  Q
    |||||||| ||||||||||||||||||||||||||||    
T  56096262 tttgaaccacgaaccttacatatattatgcattgtcc 56096226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 1075 - 1103
Alignment:
Q  187 accttacatatattatgcattgtccctac 215  Q
    |||||||||||||||||||||||||||||    
T  1075 accttacatatattatgcattgtccctac 1103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 189982 - 190010
Alignment:
Q  182 cccgaaccttacatatattatgcattgtc 210  Q
    |||||||||||||||||||||||||||||    
T  189982 cccgaaccttacatatattatgcattgtc 190010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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