View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_high_85 (Length: 213)
Name: NF20076_high_85
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_high_85 |
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Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 22777268 - 22777195
Alignment:
| Q |
125 |
aaaccaaatgtactcattcaggcaacgtatcatcacttggttgatcctaatcatgataatattatacatccttt |
198 |
Q |
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| T |
22777268 |
aaaccaaatgtactcattcaggcaacgtatcatcacttggctgatcctaatcatgataatattatacatccttt |
22777195 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22777359 - 22777284
Alignment:
| Q |
1 |
ccgtgtttctccattccaacacttggaagcaaaattattaacccaacaatctgaaagaaactcgaagaatctgaag |
76 |
Q |
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|||| ||||| | ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22777359 |
ccgtctttcttcgttccaacacctggaaacaaaactattaacccaacaatctgaaagaaactcgaagaatctgaag |
22777284 |
T |
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