View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20076_low_18 (Length: 454)

Name: NF20076_low_18
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20076_low_18
NF20076_low_18
[»] chr7 (4 HSPs)
chr7 (20-443)||(38822502-38822925)
chr7 (25-370)||(38809626-38809986)
chr7 (161-424)||(38811639-38811908)
chr7 (25-100)||(38811996-38812071)
[»] chr1 (7 HSPs)
chr1 (176-329)||(32986282-32986435)
chr1 (199-327)||(30736443-30736571)
chr1 (227-273)||(39360398-39360444)
chr1 (299-345)||(40444680-40444726)
chr1 (198-255)||(32993084-32993141)
chr1 (198-255)||(32998441-32998498)
chr1 (191-255)||(33003083-33003147)
[»] chr8 (3 HSPs)
chr8 (140-243)||(35547999-35548102)
chr8 (302-349)||(1008553-1008600)
chr8 (223-255)||(8111468-8111500)


Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 20 - 443
Target Start/End: Complemental strand, 38822925 - 38822502
Alignment:
Q  20 tcaggatccaagagttcctctaataatttttcatccaaatactcaaactctataacttgttcaccaagctccgatttaatcgttgaagatgatgatgagg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  38822925 tcaggatccaagagttcctctaataatttttcatccaaatactcaaactctataatttgttcaccaagctccgatttaaccgttgaagatgatgatgagg 38822826  T
Q  120 ttgaattggatgaagaagagggattagaagccacgttgcttggaaaatgttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagc 219  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38822825 ttgaattggatgaagaagagggattagaagccacattgcttggaaaatgttcttgaggaaaattgagaatagcagaagaacctctcatatcaaaagcagc 38822726  T
Q  220 gcgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaatttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38822725 gcgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaatttt 38822626  T
Q  320 ccccatggccttatcctcactcctctatacttaatttgctttggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38822625 ccccatggccttatcctcactcctctatacttaatttgctttggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaa 38822526  T
Q  420 tgttaacataataacttagccttt 443  Q
    ||||||||||||||||||||||||    
T  38822525 tgttaacataataacttagccttt 38822502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 25 - 370
Target Start/End: Complemental strand, 38809986 - 38809626
Alignment:
Q  25 atccaagagttcctctaataatttttcatccaaatactcaaactctataacttgttcaccaagctccgatttaatcgttgaagatgatgatga---ggtt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||   ||||    
T  38809986 atccaagagttcctctaataatttttcatccaaatactcaaactctataacttgttcaacaagttccgatttaacctttgaagatgatgatgatgaggtt 38809887  T
Q  122 gaattggatgaagaagagggattagaag---------ccacgttgcttggaaaat---gttcttgaggaaaattaagaatagcagaagaacctctcatat 209  Q
    |||||||| |||||||| || |||||||         ||||  |||  |||||||   |||| |||||||| ||||||||||| |||||||||||||| |    
T  38809886 gaattggaggaagaagacggcttagaagggttatataccacactgcaaggaaaataatgttcatgaggaaagttaagaatagctgaagaacctctcattt 38809787  T
Q  210 caaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgc 309  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  38809786 caaaagcagcacgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagctccatgtctagccgaatctcgaatctctgc 38809687  T
Q  310 agcaaattttccccatggccttatcctcactcctctatacttaatttgctttggtaattca 370  Q
     ||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  38809686 tgcacattttccccatggccttatccttactcctctatactttattttctttggtaattca 38809626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 161 - 424
Target Start/End: Complemental strand, 38811908 - 38811639
Alignment:
Q  161 ggaaaatgttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagc-----tcttgcagcttcctcagcagtgtt 255  Q
    ||||||||||| || ||||| || ||||| ||  ||||||||||||| |||||||||||  ||||||||||     | |||||||||||| |  ||| ||    
T  38811908 ggaaaatgttcatgtggaaagttgagaatggccaaagaacctctcatttcaaaagcagcatgatcataagcccttgttttgcagcttccttactagtatt 38811809  T
Q  256 aaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatc-tctgcagcaaattttccccatggccttatcctcactcctctatacttaat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |  |  | |||||||  ||||||||  |||||  ||||||||||||| ||    
T  38811808 aaatgtaccaagccaaactcgagcaccatgcctagccgaatctctaatcttaggggggaaattttggccatggccggatcctttctcctctatacttgat 38811709  T
Q  355 ttgctttggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaatgtta 424  Q
    |||| ||| ||||||   |||| ||||||||  || |   || |||||||||||||||||||||||||||    
T  38811708 ttgcattgttaattcctcttcattcacctttccctctacgtcgttttccattgtgtgtacaagaatgtta 38811639  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 38812071 - 38811996
Alignment:
Q  25 atccaagagttcctctaataatttttcatccaaatactcaaactctataacttgttcaccaagctccgatttaatc 100  Q
    |||||||||||||||||| ||| |||||||| |||||||||| |||| |||||||||||||||||| |||||||||    
T  38812071 atccaagagttcctctaacaatgtttcatcccaatactcaaaatctagaacttgttcaccaagctctgatttaatc 38811996  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 329
Target Start/End: Complemental strand, 32986435 - 32986282
Alignment:
Q  176 ggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactc 275  Q
    |||||||||||||| ||| | ||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||| || || |||||||| |  |    
T  32986435 ggaaaattaagaattgcaaatgaacctctcatattaaaagcagctctatcataagctcttgcagcttcttcagcagtgttgaaagtgccaagccatatcc 32986336  T
Q  276 gagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggcc 329  Q
        ||| ||||||   ||||| |||||||| || |||||||||||||||||||    
T  32986335 tctgaccttgcctattggaatcacgaatctcggccgcaaattttccccatggcc 32986282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 327
Target Start/End: Original strand, 30736443 - 30736571
Alignment:
Q  199 acctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatct 298  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||| || |||  |||||| || ||||| || || |||||  | ||||| |  ||     
T  30736443 acctctcatctcaaaagcagcacgatcataagctcttgcagcttcctccgcggtgagaaatgtgcctagccacacgcgtgcaccgcgtctagctgggtcc 30736542  T
Q  299 cgaatctctgcagcaaattttccccatgg 327  Q
    |||||||| || ||||| |||||||||||    
T  30736543 cgaatctcagccgcaaactttccccatgg 30736571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 39360444 - 39360398
Alignment:
Q  227 taagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaac 273  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||    
T  39360444 taagctctagcagcttcttcagcagtgttgaatgtaccaagccaaac 39360398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 345
Target Start/End: Original strand, 40444680 - 40444726
Alignment:
Q  299 cgaatctctgcagcaaattttccccatggccttatcctcactcctct 345  Q
    ||||| ||||||||| ||||||||||||||||| |||| ||||||||    
T  40444680 cgaatttctgcagcatattttccccatggccttctccttactcctct 40444726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 32993141 - 32993084
Alignment:
Q  198 aacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtt 255  Q
    |||| ||||||| ||||||| | | |||||||||||| || |||||||||||||||||    
T  32993141 aacccctcatattaaaagcatctctatcataagctctagctgcttcctcagcagtgtt 32993084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 32998498 - 32998441
Alignment:
Q  198 aacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtt 255  Q
    |||| ||||||| ||||||| | | |||||||||||| || |||||||||||||||||    
T  32998498 aacccctcatattaaaagcatctctatcataagctctagctgcttcctcagcagtgtt 32998441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 33003147 - 33003083
Alignment:
Q  191 gcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtt 255  Q
    ||||| ||||| ||||||| | ||||||| | |||||||||||| || ||||| |||||||||||    
T  33003147 gcagatgaaccactcatattataagcagctctatcataagctctagccgcttcatcagcagtgtt 33003083  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 35548102 - 35547999
Alignment:
Q  140 ggattagaagccacgttgcttggaaaatgttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcag 239  Q
    |||||| |||||||||||  |||||||||||| || |||||| | |||||||| ||||||||||| ||||| |||||||| |  ||||||||||||||||    
T  35548102 ggattataagccacgttgtatggaaaatgttcatgtggaaaaattagaatagctgaagaacctctaatatcgaaagcagcacagtcataagctcttgcag 35548003  T
Q  240 cttc 243  Q
    ||||    
T  35548002 cttc 35547999  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 1008600 - 1008553
Alignment:
Q  302 atctctgcagcaaattttccccatggccttatcctcactcctctatac 349  Q
    ||||||||||||||||| ||||||||||||  |||||| |||||||||    
T  1008600 atctctgcagcaaatttcccccatggccttcgcctcacacctctatac 1008553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 8111468 - 8111500
Alignment:
Q  223 atcataagctcttgcagcttcctcagcagtgtt 255  Q
    ||||||||||||||||||||| |||||||||||    
T  8111468 atcataagctcttgcagcttcttcagcagtgtt 8111500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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