View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_2 (Length: 549)
Name: NF20076_low_2
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 49740096 - 49739565
Alignment:
| Q |
1 |
ggttcatatttatgtaagcaatggattgattaaagagttatgcttgaagagctaaaaatggaattgaaaatataaattttaaagcaatttcttaatttac |
100 |
Q |
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| T |
49740096 |
ggttcatatttatgtaagcaatggattgattaaagagttatgcttgaagagctaaaaatggaattgaaaatataaattttaaagcaatttcttaatttac |
49739997 |
T |
|
| Q |
101 |
ttcatgtgatatcaaaggaactgtaccgtacactattaaagtgacaaataacaggggnnnnnnnncttctcagatagtctagaaccatctaactacagtt |
200 |
Q |
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| T |
49739996 |
ttcatgtgatatcaaaggaactgtaccgtacactattaaagtgacaaataacaggggaaaaaaaacttctcagatagtctagaaccatctaactacagtt |
49739897 |
T |
|
| Q |
201 |
gaaatttgatatctattcatagttcaaacataattcaaggatgaatgattacaacttccaagtgttaatttaattagtggatggtgtgtgatactttcca |
300 |
Q |
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| T |
49739896 |
gaaatttgatatctattcatagttcaaacataattcaaggatgaatgattacaacttccaagtgttaatttaattagtggatggtgtgtgatactttcca |
49739797 |
T |
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| Q |
301 |
tatacannnnnnncccttattcaaagagctcatgttgttccaaggtgcatttaatgtttaaaccatatataaatcataaatggctagctttggtaatgag |
400 |
Q |
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| T |
49739796 |
tatacatttttttcccttattcaaagagcacatgttgttccaaggtgcatttaatgtttaaaccatatataaatcataaatggctagctttggtaatgag |
49739697 |
T |
|
| Q |
401 |
catcttgttctgtaatatatattcttctgctttatcttatagtttaaagatggtcaggttagtttgcaatgcaagcctattgccaactgttccatcaaac |
500 |
Q |
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| T |
49739696 |
catcttgttctgtaatatatattcttctgctttatcttatagtttaaagatggtcaggttagcttgcaatgcaagcctattgccaactgttccatcaaac |
49739597 |
T |
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| Q |
501 |
tttgtagttcttatagtttccttcattctttt |
532 |
Q |
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| T |
49739596 |
tttgtagttcttatagtttccttcattctttt |
49739565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 530
Target Start/End: Original strand, 51210037 - 51210175
Alignment:
| Q |
385 |
tagctttggtaatgagcatcttgttctgtaatatatattcttctgctttatcttatagtttaaagatggtcaggttagtttgcaatgcaagcctattgcc |
484 |
Q |
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||||||||| ||||||||||| ||||||| ||||||| |||||||||| || ||||||||| || | ||||| ||||||||| || ||| |||| |
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| T |
51210037 |
tagctttggcaatgagcatctaattctgta----ttattcttttgctttatctcatgatttaaagatagtgaagttagcttgcaatgctaggctactgcc |
51210132 |
T |
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| Q |
485 |
aactgttccatcaaactttgtagttcttatagtttccttcattctt |
530 |
Q |
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| T |
51210133 |
aagtgttccatcaacct---tcattcttatagttcccttcattctt |
51210175 |
T |
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