View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20076_low_20 (Length: 430)

Name: NF20076_low_20
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20076_low_20
NF20076_low_20
[»] chr1 (2 HSPs)
chr1 (16-418)||(648490-648892)
chr1 (16-355)||(685955-686289)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 648892 - 648490
Alignment:
Q  16 tgtgcttttgattgtcggtgaagggaagcacccatctttcccctgcacaagagataagaagtccagaatcaagagaagccagtggaatatgcaaacagac 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  648892 tgtgattttgattgtcggtgaagggaagcacccatctttcccctgcacaagagataagaagtccagaatcaagagaagccagtggaatatgcaaacagac 648793  T
Q  116 aaatcataaaaggcatggtgcaattagattgaaagtcactgaaagtgtgagtgtgatttaatattttaaaatttaaaagtctggtgtgtttaagacaaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  648792 aaatcataaaaggcatggtgcaattagattgaaagtcactgaaagtgtgagtgtgatttaatattttaaaatttaaaagtctggtgtgtttaagacaaat 648693  T
Q  216 cttcatttattcagagcaaaagctagcaatgtttaaatactgggtgtaatttagaaaagtaatataatgttttagcataattgaaattttaggacttgtt 315  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  648692 cttcatttattcagaacaaaagctagcaatgtttaaatactgggtgtaatttagaaaagtaatataatgttttagcataattgaaattttaggacttgtt 648593  T
Q  316 gttggttttgagaaaatgttcatgttttcatgtttagattgcatcgtctattactatctttaagcagtacaatcaatataaatctctcctttatatccat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  648592 gttggttttgagaaaatgttcatgttttcatgtttagattgcatcgtctattactatctttaagcagtacaatcaatataaatctctcctttatatccat 648493  T
Q  416 att 418  Q
    |||    
T  648492 att 648490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 686289 - 685955
Alignment:
Q  16 tgtgcttttgattgtcggtgaagggaagcacccatctttcccctgcacaagagataagaagtccagaatcaagagaagccagtggaatatgcaaacagac 115  Q
    |||| |||||||  ||||||||| || || ||||| ||||||||| ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||     
T  686289 tgtgattttgataatcggtgaagtgacgctcccatttttcccctgaacaagagataaaaagtccataatcaagagacggcagttgaatatgcaaacagat 686190  T
Q  116 aaatcataaaaggcatggtgcaattagattgaaagtcactgaaagtgtgagtgtgatttaatattttaaaatttaaaagtctggtgtgtttaagacaaat 215  Q
    ||| ||||||||| ||| | ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | |||| || ||||||    
T  686189 aaaccataaaaggtatgatacaactagattgaaagtcactgaaagtgtgagtgtga-ttaatattttaaaatttaaaagtct-atctgttcaa-acaaat 686093  T
Q  216 cttcatttattcagagcaaaagctagcaatgtttaaatactgggtgtaatttagaaaagtaatataatgttttagcataattgaaattttaggacttgtt 315  Q
     |||||||||| |||  ||||||||||||||||| || ||||||||||||||| ||||||  ||| |||||||||||||| |||||||||||||||||||    
T  686092 attcatttattaagaaaaaaagctagcaatgtttgaaaactgggtgtaatttataaaagttctattatgttttagcataactgaaattttaggacttgtt 685993  T
Q  316 gttggttttgagaaaatgttcatgttttcatgtttagatt 355  Q
     ||||  ||||||||||||||||||||| |||||| ||||    
T  685992 tttgg--ttgagaaaatgttcatgtttttatgtttggatt 685955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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