View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20076_low_23 (Length: 408)

Name: NF20076_low_23
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20076_low_23
NF20076_low_23
[»] chr2 (21 HSPs)
chr2 (26-394)||(42635303-42635662)
chr2 (67-222)||(5139963-5140114)
chr2 (63-204)||(864111-864248)
chr2 (63-179)||(7709779-7709894)
chr2 (53-154)||(37285172-37285273)
chr2 (58-166)||(6951724-6951833)
chr2 (58-176)||(23403724-23403842)
chr2 (65-166)||(8503809-8503909)
chr2 (81-179)||(9132273-9132371)
chr2 (79-221)||(14960642-14960780)
chr2 (241-322)||(42629183-42629266)
chr2 (63-154)||(35714531-35714621)
chr2 (51-177)||(12988040-12988166)
chr2 (63-154)||(27183809-27183904)
chr2 (63-154)||(27833351-27833446)
chr2 (51-134)||(21215341-21215422)
chr2 (77-152)||(15358705-15358780)
chr2 (63-138)||(42763774-42763849)
chr2 (63-145)||(21447172-21447254)
chr2 (58-91)||(9132267-9132300)
chr2 (62-138)||(37195237-37195312)
[»] chr4 (17 HSPs)
chr4 (53-222)||(37306399-37306564)
chr4 (66-220)||(31699474-31699624)
chr4 (52-222)||(43480264-43480430)
chr4 (63-220)||(51475159-51475312)
chr4 (49-154)||(50251510-50251615)
chr4 (58-223)||(6540251-6540412)
chr4 (58-177)||(30111795-30111913)
chr4 (103-160)||(51823131-51823188)
chr4 (105-178)||(5994940-5995013)
chr4 (79-145)||(16650521-16650587)
chr4 (105-179)||(27654511-27654585)
chr4 (111-163)||(27362638-27362690)
chr4 (79-154)||(21710578-21710652)
chr4 (63-150)||(26369048-26369135)
chr4 (63-145)||(49738954-49739036)
chr4 (98-143)||(27789954-27789999)
chr4 (100-156)||(7283216-7283272)
[»] chr8 (26 HSPs)
chr8 (57-222)||(6580856-6581016)
chr8 (58-179)||(33440536-33440657)
chr8 (58-221)||(28700581-28700740)
chr8 (49-166)||(45057954-45058071)
chr8 (58-163)||(30085426-30085531)
chr8 (58-179)||(1311472-1311593)
chr8 (75-154)||(33133475-33133554)
chr8 (59-149)||(35188416-35188506)
chr8 (63-156)||(12212155-12212248)
chr8 (63-156)||(12456583-12456676)
chr8 (123-204)||(16896336-16896413)
chr8 (66-160)||(14022030-14022124)
chr8 (70-163)||(13990490-13990583)
chr8 (79-139)||(31703822-31703882)
chr8 (63-163)||(34434946-34435046)
chr8 (115-154)||(31024183-31024222)
chr8 (52-135)||(38695671-38695754)
chr8 (79-149)||(902419-902489)
chr8 (58-148)||(16441832-16441922)
chr8 (75-158)||(4480286-4480369)
chr8 (128-163)||(34172507-34172542)
chr8 (58-163)||(6387611-6387716)
chr8 (52-149)||(35494150-35494246)
chr8 (58-119)||(14195233-14195298)
chr8 (63-123)||(16895274-16895334)
chr8 (58-138)||(33417757-33417837)
[»] chr1 (20 HSPs)
chr1 (58-220)||(24886065-24886223)
chr1 (58-178)||(19078939-19079059)
chr1 (58-178)||(19126827-19126947)
chr1 (63-220)||(29068111-29068264)
chr1 (58-166)||(932007-932115)
chr1 (58-178)||(31602087-31602207)
chr1 (63-178)||(14562565-14562680)
chr1 (58-133)||(11709656-11709731)
chr1 (75-179)||(16173053-16173156)
chr1 (75-140)||(52444448-52444512)
chr1 (63-150)||(43275838-43275925)
chr1 (67-178)||(17642388-17642497)
chr1 (61-179)||(8050003-8050121)
chr1 (58-138)||(11135814-11135894)
chr1 (51-102)||(19079022-19079073)
chr1 (51-102)||(19126910-19126961)
chr1 (113-156)||(24733928-24733971)
chr1 (136-179)||(31602093-31602136)
chr1 (111-156)||(24733817-24733862)
chr1 (52-92)||(48863755-48863795)
[»] chr5 (28 HSPs)
chr5 (58-222)||(30892135-30892295)
chr5 (53-220)||(17190604-17190769)
chr5 (53-179)||(18237168-18237294)
chr5 (58-220)||(42958466-42958624)
chr5 (66-221)||(5990513-5990664)
chr5 (54-163)||(32153741-32153850)
chr5 (63-149)||(41020240-41020326)
chr5 (49-149)||(34320922-34321022)
chr5 (58-154)||(28436460-28436556)
chr5 (53-140)||(10393791-10393878)
chr5 (53-137)||(27726818-27726902)
chr5 (75-166)||(2976559-2976650)
chr5 (69-179)||(40699511-40699622)
chr5 (49-149)||(41746132-41746230)
chr5 (77-179)||(26435319-26435420)
chr5 (52-102)||(26435382-26435432)
chr5 (51-132)||(16875283-16875364)
chr5 (66-134)||(2406004-2406072)
chr5 (75-163)||(34457661-34457748)
chr5 (51-91)||(40699498-40699538)
chr5 (63-142)||(26072174-26072253)
chr5 (89-163)||(1249028-1249102)
chr5 (79-141)||(6198601-6198663)
chr5 (68-138)||(42224626-42224696)
chr5 (49-102)||(18237153-18237206)
chr5 (61-102)||(22524395-22524436)
chr5 (115-163)||(9693437-9693485)
chr5 (75-154)||(38732427-38732504)
[»] chr7 (25 HSPs)
chr7 (53-179)||(557409-557535)
chr7 (59-154)||(39237689-39237784)
chr7 (58-179)||(47822007-47822128)
chr7 (63-220)||(36738485-36738643)
chr7 (70-224)||(41873427-41873577)
chr7 (58-178)||(43929994-43930112)
chr7 (75-177)||(17878725-17878827)
chr7 (79-222)||(42815604-42815743)
chr7 (49-179)||(45508529-45508657)
chr7 (87-149)||(48745290-48745352)
chr7 (98-163)||(29310470-29310535)
chr7 (83-163)||(32377306-32377386)
chr7 (55-163)||(25695904-25696012)
chr7 (97-150)||(16082817-16082870)
chr7 (69-154)||(46947819-46947903)
chr7 (58-145)||(49160314-49160401)
chr7 (77-154)||(3399043-3399124)
chr7 (58-142)||(26703465-26703549)
chr7 (52-131)||(32000434-32000514)
chr7 (55-90)||(22159050-22159085)
chr7 (55-90)||(22217758-22217793)
chr7 (58-142)||(19840910-19840994)
chr7 (106-142)||(22786222-22786258)
chr7 (58-102)||(36738568-36738612)
chr7 (58-138)||(45909531-45909611)
[»] chr6 (6 HSPs)
chr6 (58-204)||(32439504-32439646)
chr6 (58-220)||(7447561-7447718)
chr6 (76-175)||(17221547-17221646)
chr6 (56-178)||(30479895-30480018)
chr6 (117-160)||(28030569-28030612)
chr6 (63-147)||(28030642-28030726)
[»] chr3 (20 HSPs)
chr3 (66-220)||(48543138-48543288)
chr3 (58-220)||(54186924-54187082)
chr3 (58-217)||(29235675-29235832)
chr3 (58-164)||(13639430-13639536)
chr3 (58-191)||(38602836-38602967)
chr3 (38-166)||(46893391-46893517)
chr3 (53-219)||(50320436-50320597)
chr3 (75-179)||(20909325-20909429)
chr3 (57-163)||(28215775-28215881)
chr3 (58-149)||(42780698-42780789)
chr3 (52-150)||(46156684-46156780)
chr3 (53-118)||(45800738-45800801)
chr3 (58-138)||(27243120-27243200)
chr3 (95-161)||(26223190-26223256)
chr3 (79-140)||(357833-357894)
chr3 (55-100)||(3770541-3770586)
chr3 (110-179)||(54140813-54140882)
chr3 (52-138)||(50661541-50661627)
chr3 (126-163)||(1741335-1741372)
chr3 (77-141)||(1717764-1717828)
[»] scaffold0922 (1 HSPs)
scaffold0922 (75-154)||(710-789)
[»] scaffold0147 (1 HSPs)
scaffold0147 (51-178)||(28331-28458)
[»] scaffold0294 (1 HSPs)
scaffold0294 (87-148)||(17925-17985)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 394
Target Start/End: Original strand, 42635303 - 42635662
Alignment:
Q  26 tatttatattgatgaggagtatcatgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatccc 125  Q
    |||||||||||| |||||||   ||| ||||||||||||||| || || | | ||||||||||||||| ||||||||||||||||||| |||||||| ||    
T  42635303 tatttatattgacgaggagtgctatggacactctctttctaatacccacttttttattgggtgaaattcatgtgggtaccacacattgaaaatggattcc 42635402  T
Q  126 acataaagtggtgagacccacatgagttttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctcttata 225  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||| ||||              ||  || |||||||||||||    
T  42635403 acataaagtgatgagacccacatgagtttcatccaataggacgatgagtgttagttagagagagtg--------------tttctagcatttctcttata 42635488  T
Q  226 ttgatagcaccatg-----aatgtgataaagaaacatgtaactagttatgtggacgacatttaagtttgaacatttcaagatcaaaattccaatcctttt 320  Q
    ||||||||||  ||     ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42635489 ttgatagcacggtgctctgaatgtgataaagaaacatgtaactaattatgtggacgagatttaagtttgaacatttcaagatcaaaattccaatcctttt 42635588  T
Q  321 ctaaaaattaaagcattggttatgttgcgggtggacttttactttgacttgtctatagagtaatagtaccttct 394  Q
    ||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42635589 ctagaaattaaagcattggttacgttgtgggtggacttttactttgacttgtctatagagtaatagtaccttct 42635662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 5140114 - 5139963
Alignment:
Q  67 acactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagga 166  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| | |||||||||    
T  5140114 acactcactctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaaacccgcatgagtttcacccaatagga 5140015  T
Q  167 caatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctt 222  Q
     | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||||    
T  5140014 gagtgagtgttag----agagagtgctagaaagagagtgttcctagcatttctctt 5139963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 864248 - 864111
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 162  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |||| ||||| || |||| |||||||    
T  864248 tctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagcgatgagccccacttgggtttcatccaat 864149  T
Q  163 aggacaatgagtgttagttaaagaaagtgctagaaagagagt 204  Q
    || | ||| ||||||||    ||| |||||||||||||||||    
T  864148 agaaaaataagtgttag----agagagtgctagaaagagagt 864111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 7709779 - 7709894
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 162  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | || ||    
T  7709779 tctaacactcactcttttattgggtgaa-tttatgtgggtaccacacattggaaatagatcccacataaagtggtgagtcccacatgagtttcaccctat 7709877  T
Q  163 aggacaatgagtgttag 179  Q
    |||| | ||||||||||    
T  7709878 aggagagtgagtgttag 7709894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 37285273 - 37285172
Alignment:
Q  53 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 152  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||| || ||||||    
T  37285273 acactctctttctaacactcactcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgagactcaaatgagt 37285174  T
Q  153 tt 154  Q
    ||    
T  37285173 tt 37285172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 6951724 - 6951833
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaattt-atgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 156  Q
    |||||| | ||||| | |||||||||| |||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  6951724 ctctttgtgacactaactctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccacataaagtggtgagacccacatgagtttca 6951823  T
Q  157 tccaatagga 166  Q
    ||||||||||    
T  6951824 tccaatagga 6951833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 23403842 - 23403724
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    ||||||||||| |||| ||||||| ||||||||||  ||||||||||||||| |||||||||| ||||| |||||| || ||||||||||||||||| |     
T  23403842 ctctttctaaccctcactctcttactgggtgaaatccatgtgggtaccacactttggaaatgggtcccaaataaagcggcgagacccacatgagtttcac 23403743  T
Q  158 ccaataggacaatgagtgt 176  Q
    ||||| ||| | |||||||    
T  23403742 ccaattggagagtgagtgt 23403724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 8503809 - 8503909
Alignment:
Q  65 taacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatag 164  Q
    ||||||||| ||| |||||||||||||| ||||||| |||| ||||||  ||||| ||| ||||||||||||||||| |||||||||||| |||||||||    
T  8503809 taacactcactct-ttattgggtgaaatctatgtggataccgcacattaaaaatgaatctcacataaagtggtgagatccacatgagtttcatccaatag 8503907  T
Q  165 ga 166  Q
    ||    
T  8503908 ga 8503909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 9132371 - 9132273
Alignment:
Q  81 attgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttag 179  Q
    |||||||||||| |||||||||||||| | |||||||| | | ||||||||| ||||||||||||| || |||| | |||||| || | ||||||||||    
T  9132371 attgggtgaaatctatgtgggtaccactctttggaaattggttccacataaaatggtgagacccacttgggtttcacccaataagagagtgagtgttag 9132273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 14960780 - 14960642
Alignment:
Q  79 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgtta 178  Q
    ||||||| |||||||||||||| ||| |||||||| ||||||||| |||||||| | |||||||  | |||||||| | ||||||  | || |||| |||    
T  14960780 ttattggatgaaatttatgtggatactacacattgaaaatggatctcacataaaatagtgagacttatatgagtttcacccaataaaaaaacgagtatta 14960681  T
Q  179 gttaaagaaagtgctagaaagagagtcttcataacatttctct 221  Q
    |  ||||||  ||||| |||||| || ||||||||||||||||    
T  14960680 g--aaagaa--tgctaaaaagagggtattcataacatttctct 14960642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 42629183 - 42629266
Alignment:
Q  241 atgtgataaagaaacatgta--actagttatgtggacgacatttaagtttgaacatttcaagatcaaaattccaatccttttct 322  Q
    ||||||| |||||| |||||  | |||||||||||||||  ||| |||||||||||||||||||| || |||||||||||||||    
T  42629183 atgtgatgaagaaatatgtataattagttatgtggacgaggtttgagtttgaacatttcaagatcgaatttccaatccttttct 42629266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 35714621 - 35714531
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    |||||||| || |||||| |||| ||||||  ||||||||||||||| |||||||||| || | ||||||||||||||||| ||||| ||||    
T  35714621 tctaacacccactctcttgttggatgaaatccatgtgggtaccacactttggaaatgg-tctcgcataaagtggtgagacctacatgggttt 35714531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 12988166 - 12988040
Alignment:
Q  51 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 150  Q
    |||||| ||||||| |||||||  | ||||||||||  || |  |||||||| | |||| ||||||||   ||||||||||||||||||||||||| ||     
T  12988166 gaacaccctctttccaacactccctgtcttattgggcaaactcaatgtgggtccaacactttggaaataagtcccacataaagtggtgagacccacttgg 12988067  T
Q  151 gttttatccaataggacaatgagtgtt 177  Q
    |||| ||||| | ||| | ||||||||    
T  12988066 gtttaatccagttggagagtgagtgtt 12988040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 27183904 - 27183809
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccac----ataaagtggtgagacccacatgagttt 154  Q
    |||||||| || ||||||||| ||||||||  ||||| |||| |||| |||||||||||||  ||    |||||||||||||||| ||||||||||    
T  27183904 tctaacacacattctcttattaggtgaaatccatgtgagtactacacgttggaaatggatcttacatatataaagtggtgagacctacatgagttt 27183809  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 27833446 - 27833351
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccac----ataaagtggtgagacccacatgagttt 154  Q
    |||||||| || ||||||||| ||||||||  ||||| |||| |||| |||||||||||||  ||    |||||||||||||||| ||||||||||    
T  27833446 tctaacacacattctcttattaggtgaaatccatgtgagtactacacgttggaaatggatcttacatatataaagtggtgagacctacatgagttt 27833351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 21215341 - 21215422
Alignment:
Q  51 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagt 134  Q
    |||||||||||||  ||||||||  ||| |||||||| ||||| |||||  | |||||| ||| ||||||||||||||||||||    
T  21215341 gaacactctcttttcaacactca--ctcatattgggtaaaattaatgtgaatcccacactttgaaaatggatcccacataaagt 21215422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 15358780 - 15358705
Alignment:
Q  77 tcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 152  Q
    |||||||| |||||||| |||||| ||| ||||  || |||| ||||||||||||| | |||||||||| ||||||    
T  15358780 tcttattgtgtgaaattcatgtggatactacactatgaaaatagatcccacataaaatagtgagacccagatgagt 15358705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 42763849 - 42763774
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 138  Q
    ||||||||||  ||||||||| ||||||||  |||||| |  ||||| |||||||||| || ||||||||||||||    
T  42763849 tctaacactcgttctcttattaggtgaaatcaatgtggttctcacactttggaaatgggtctcacataaagtggtg 42763774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 21447254 - 21447172
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 145  Q
    |||||||| || ||| |||||| |||||||  ||||||||   |||| |||||||||| ||||||||||| ||||| ||||||    
T  21447254 tctaacacccactcttttattgtgtgaaatcaatgtgggtcttacactttggaaatgggtcccacataaaatggtgggaccca 21447172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 9132267 - 9132300
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaa 91  Q
    |||||||||||||||| |||||||||||||||||    
T  9132267 ctctttctaacactcactctcttattgggtgaaa 9132300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 37195237 - 37195312
Alignment:
Q  62 ttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 138  Q
    |||||||||||| ||| |||||   ||||||  |||||||||||| |||||  ||||||||| ||||||||||||||    
T  37195237 ttctaacactcactcttttattta-tgaaatcaatgtgggtaccaaacattaaaaatggatctcacataaagtggtg 37195312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 37306564 - 37306399
Alignment:
Q  53 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 152  Q
    ||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37306564 acactttctttctaacactcactttcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgagacccacatgagt 37306465  T
Q  153 tttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctt 222  Q
    || | ||||||  | | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||||    
T  37306464 ttcacccaatataagagtgagtgttag----agagagtgctagaaagagagtgttcctagcatttctctt 37306399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 31699624 - 31699474
Alignment:
Q  66 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagg 165  Q
    |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||    
T  31699624 aacactcactctcttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaatagg 31699525  T
Q  166 acaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 220  Q
    | | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||    
T  31699524 agagtgagtgttag----agagagtgctagaaagagagtgttcttagcatttctc 31699474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 43480264 - 43480430
Alignment:
Q  52 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgag 151  Q
    ||||| |||| ||||||||||| | ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43480264 aacaccctctctctaacactcactttcttattggctgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagacccacatgag 43480363  T
Q  152 ttttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctt 222  Q
    ||| | ||||||||| | ||| || |||     || ||||||||||||||||| ||| || ||||||||||    
T  43480364 tttcacccaataggagagtgactgctag----ggagagtgctagaaagagagtgttcctagcatttctctt 43480430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 51475312 - 51475159
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 162  Q
    |||||||| || ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||    
T  51475312 tctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcacccaat 51475213  T
Q  163 aggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 220  Q
    | ||   ||||||||||    ||| ||||||||||||||||| ||| || ||||||||    
T  51475212 aagagggtgagtgttag----agagagtgctagaaagagagtgttcctagcatttctc 51475159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 50251615 - 50251510
Alignment:
Q  49 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 148  Q
    ||||||||||||||||||||||||| | | ||||||||||||||| |||||| |||||||| ||| ||||||||||||| |||| ||||||||| |||||    
T  50251615 atgaacactctctttctaacactcacttttttattgggtgaaattcatgtggataccacacgttgaaaatggatcccacgtaaaatggtgagactcacat 50251516  T
Q  149 gagttt 154  Q
    ||||||    
T  50251515 gagttt 50251510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 6540251 - 6540412
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||||| |||||  || ||||||||||||||||||  |||||| || || ||||||||||||||||| ||| |||||||||||| |||||| ||||| |     
T  6540251 ctctttgtaacatccactctcttattgggtgaaatcaatgtggttatcatacattggaaatggatcctacacaaagtggtgagatccacataagtttcac 6540350  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctta 223  Q
    ||||||||| ||||||||||||    ||| |||| |||||||||||| ||| || |||||||||||    
T  6540351 ccaataggagaatgagtgttag----agagagtgatagaaagagagtgttcctaccatttctctta 6540412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 30111795 - 30111913
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| | ||||||||| ||||| | |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |     
T  30111795 ctctctctaacactcactttcttattggatgaaagtcatgtgggtaccacacattgg-aattgatcccacataaagtggtgagatccacatgagtttcac 30111893  T
Q  158 ccaataggacaatgagtgtt 177  Q
    |||||| || | ||||||||    
T  30111894 ccaatatgagagtgagtgtt 30111913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 51823131 - 51823188
Alignment:
Q  103 accacacattggaaatggatcccacataaagtggtgagacccacatgagttttatcca 160  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||    
T  51823131 accacacattaaaaatggatcgcacataaagtggtgagacccacatgagtttcatcca 51823188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 5994940 - 5995013
Alignment:
Q  105 cacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgtta 178  Q
    |||||||||||||||| | |||| |||||||||||| |  |||| |||||||||||||| || |||||||||||    
T  5994940 cacacattggaaatgggttccacttaaagtggtgagtcatacattagttttatccaataagagaatgagtgtta 5995013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 16650587 - 16650521
Alignment:
Q  79 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 145  Q
    ||||||| ||||||||||||||| |||| |||| | |||||||||||||||||  ||| ||||||||    
T  16650587 ttattggatgaaatttatgtgggcaccaaacatcgaaaatggatcccacataagttggcgagaccca 16650521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 27654585 - 27654511
Alignment:
Q  105 cacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttag 179  Q
    ||||| |||||||||| | |||| |||||||||| |||  |||| |||||||||||||| || ||||||||||||    
T  27654585 cacacgttggaaatgggttccacttaaagtggtgggacatacattagttttatccaataagagaatgagtgttag 27654511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 27362638 - 27362690
Alignment:
Q  111 ttggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 163  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||| || |||||    
T  27362638 ttggaaatggatctcacgtaaagtggtgagatccacatgagtttcattcaata 27362690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 21710652 - 21710578
Alignment:
Q  79 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    ||||| ||||||||||||||||||| |||| |||| |||| || | ||||||||||| | |||| |||||||||||    
T  21710652 ttatttggtgaaatttatgtgggtatcacaaattgaaaataga-ctcacataaagtgataagactcacatgagttt 21710578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 26369048 - 26369135
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 150  Q
    |||| |||||| ||||||||| ||||||| |  |||||||  ||| | || |||||| | ||||||||||||| ||||||||||||||    
T  26369048 tctagcactcactctcttattcggtgaaactcgtgtgggtctcacgctttagaaatgaaacccacataaagtgatgagacccacatga 26369135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 49738954 - 49739036
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 145  Q
    ||||||||||| ||| ||||| ||||||||  ||||||||   |||| |||||||| | |||||||||| |||||| ||||||    
T  49738954 tctaacactcactcttttatttggtgaaatccatgtgggtcatacactttggaaattggtcccacataatgtggtgggaccca 49739036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 27789954 - 27789999
Alignment:
Q  98 tgggtaccacacattggaaatggatcccacataaagtggtgagacc 143  Q
    ||||||||||  |||| |||||||| ||||||||||||||||||||    
T  27789954 tgggtaccaccaattgtaaatggataccacataaagtggtgagacc 27789999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 7283272 - 7283216
Alignment:
Q  100 ggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 156  Q
    ||||| ||||||||||||| ||||||| ||||| |  |||||||||||||| |||||    
T  7283272 ggtacgacacattggaaatagatcccagataaaatattgagacccacatgaatttta 7283216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 6580856 - 6581016
Alignment:
Q  57 tctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 156  Q
    ||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  6580856 tctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattggaaat-gatcccacataaagtggtgagacccacatgagtttca 6580954  T
Q  157 tccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctt 222  Q
     ||||||| |   ||||||||||    ||| ||||||||||||||||| ||| |||||||||||||    
T  6580955 cccaatagaagggtgagtgttag----agagagtgctagaaagagagtgttcttaacatttctctt 6581016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 33440657 - 33440536
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  33440657 ctctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 33440558  T
Q  158 ccaataggacaatgagtgttag 179  Q
    | ||||||| | ||||||||||    
T  33440557 ctaataggagagtgagtgttag 33440536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 28700581 - 28700740
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |     
T  28700581 ctctctctaacactcactctcttattgggttaaatttatgtgggtaccacatattggaaatgaatcccacataaagtggtgagactcacatgagtttcac 28700680  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctct 221  Q
     |||||| | | |||||    ||||||||  ||| |||||||| ||| |||||| |||||||||    
T  28700681 tcaatagaagagtgagt----gttaaagagtgtgatagaaagaaagtgttcatagcatttctct 28700740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 45058071 - 45057954
Alignment:
Q  49 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 148  Q
    ||||||||| ||| ||||||||||| ||||||||||| ||||| ||||||| ||  ||||| |||||||||||||||||||||||||  |||||||||||    
T  45058071 atgaacactttctctctaacactcactctcttattggttgaaacttatgtgagtctcacactttggaaatggatcccacataaagtgacgagacccacat 45057972  T
Q  149 gagttttatccaatagga 166  Q
     ||||| | |||||||||    
T  45057971 aagtttcacccaatagga 45057954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 30085531 - 30085426
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||| | |||||||||| |||||||| ||||| ||  ||||  ||||||||||||||||||||||||||||||| |||||||||||| |     
T  30085531 ctctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatcccacataaagtggtgagatccacatgagtttcac 30085432  T
Q  158 ccaata 163  Q
    ||||||    
T  30085431 ccaata 30085426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 1311593 - 1311472
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    ||||||||||||||||   ||||||| ||||| ||  ||||||||  ||||| |||||||||||||||||||||| ||||||||||| |||| |||| |     
T  1311593 ctctttctaacactcacattcttatttggtgagatccatgtgggtttcacactttggaaatggatcccacataaaatggtgagacccgcatgggtttcac 1311494  T
Q  158 ccaataggacaatgagtgttag 179  Q
    |||||| || || |||||||||    
T  1311493 ccaataagagaaggagtgttag 1311472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 33133475 - 33133554
Alignment:
Q  75 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    ||||||||||| ||||||| ||||  ||||||||| |||||||||| ||| ||||||||||||||| |||||||||||||    
T  33133475 tctcttattggatgaaattcatgtaagtaccacactttggaaatgggtccgacataaagtggtgaggcccacatgagttt 33133554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 35188506 - 35188416
Alignment:
Q  59 tctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 149  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||  ||||| |||||||| | |||||| |||||||||| || |||||||    
T  35188506 tctttctaacactcactctcttatagggtgaaattaatgtgggtctcacactttggaaataggtcccacgtaaagtggtgggatccacatg 35188416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 12212155 - 12212248
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 156  Q
    ||||||| ||| ||| || |||||||||||  |||||||| | |||| |||||||||| |||||||||||||||||||| ||| |||| |||||    
T  12212155 tctaacattcactcttttcttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccacataaagtggtgagatccatatgaatttta 12212248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 12456583 - 12456676
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 156  Q
    ||||||| ||| ||| || |||||||||||  |||||||| | |||| |||||||||| |||||||||||||||||||| ||| |||| |||||    
T  12456583 tctaacattcactcttttcttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccacataaagtggtgagatccatatgaatttta 12456676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 16896336 - 16896413
Alignment:
Q  123 cccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagt 204  Q
    |||||||||||||||||||||||||||||||| | | ||||| | ||||||||||||    ||| |||||||||||||||||    
T  16896336 cccacataaagtggtgagacccacatgagtttcaccaaatagaaaaatgagtgttag----agagagtgctagaaagagagt 16896413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 14022030 - 14022124
Alignment:
Q  66 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatcca 160  Q
    |||| ||| ||||||||| ||||||||| |||| ||| ||| || ||||||| |||||||||||||| ||| |||||||||| || ||| |||||    
T  14022030 aacattcactctcttattcggtgaaattaatgtaggtcccaaactttggaaacggatcccacataaactggcgagacccacacgaatttcatcca 14022124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 13990490 - 13990583
Alignment:
Q  70 ctcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 163  Q
    |||| ||||||||| ||||||| |||||| ||  |||||  ||| |||| | ||| ||||||||||||||||||||||||||||| | ||||||    
T  13990490 ctcattctcttatttggtgaaacttatgtaggatccacaatttgaaaataggtcctacataaagtggtgagacccacatgagtttcacccaata 13990583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 31703882 - 31703822
Alignment:
Q  79 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtga 139  Q
    ||||||| | ||||| |||||| || ||||| |||||||||||||||||||||||||||||    
T  31703882 ttattggttaaaattaatgtggatatcacactttggaaatggatcccacataaagtggtga 31703822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 34434946 - 34435046
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 162  Q
    ||||||| ||| ||||||||||| |||||  |||| | || |||||| ||||||||| |||||| |||||| ||||||| ||||||| |||| | |||||    
T  34434946 tctaacattcactctcttattggatgaaacctatgcgagtcccacaccttggaaatgcatcccatataaagcggtgagatccacatgggtttcacccaat 34435045  T
Q  163 a 163  Q
    |    
T  34435046 a 34435046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 31024183 - 31024222
Alignment:
Q  115 aaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  31024183 aaatgaatcccacataaagtggtgagacccacatgagttt 31024222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 38695671 - 38695754
Alignment:
Q  52 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtg 135  Q
    |||||||||||| ||||||||| ||||||||||| ||||||| |||||| |  || || || |||||||||||| ||| |||||    
T  38695671 aacactctctttataacactcactctcttattggatgaaattaatgtggatctcatactttagaaatggatcccgcatgaagtg 38695754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 902419 - 902489
Alignment:
Q  79 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 149  Q
    ||||||||||||||  |||||| | | || | |||||||||| ||||||||||||||||| ||||||||||    
T  902419 ttattgggtgaaatcaatgtggatcctacgctttggaaatgggtcccacataaagtggtgggacccacatg 902489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 16441832 - 16441922
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 148  Q
    |||| ||||||||||| ||| |||||| ||||||| ||||| ||| ||| |  | ||||||||||||||||||| ||| || |||||||||    
T  16441832 ctctctctaacactcactcttttattgagtgaaatctatgtaggttccaaaattcggaaatggatcccacataaggtgatgggacccacat 16441922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 4480369 - 4480286
Alignment:
Q  75 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatc 158  Q
    ||||||||| | |||||| ||  ||| |||||||| ||  ||||| ||||||| |||||||||||||| ||||||| |||||||    
T  4480369 tctcttattagatgaaatctacatggataccacactttaaaaatgaatcccacttaaagtggtgagacacacatgaattttatc 4480286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 34172542 - 34172507
Alignment:
Q  128 ataaagtggtgagacccacatgagttttatccaata 163  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34172542 ataaagtggtgagactcacatgagttttatccaata 34172507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 6387716 - 6387611
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| ||||||||||||| |||   ||||||||   | || ||||||||||| |||||||||| ||||| |||  ||||   ||||||    
T  6387716 ctctctctaacactcattctcttattgggttaaaacaatgtgggtcgtatactttggaaatggaacccacataaaatggtgggacatacattgattttat 6387617  T
Q  158 ccaata 163  Q
    ||||||    
T  6387616 ccaata 6387611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 35494150 - 35494246
Alignment:
Q  52 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 149  Q
    ||||||||||||| |||||||| |||| |||||| | ||||  ||||| ||  ||||| || ||||||| ||||||||||| ||||| ||| ||||||    
T  35494150 aacactctctttccaacactcactctcctattggataaaatcgatgtgagtctcacac-tttgaaatgggtcccacataaaatggtgggacacacatg 35494246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 14195233 - 14195298
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaattta----tgtgggtaccacacattggaaatg 119  Q
    |||| ||||||||||| ||||||||||| ||||| | |    ||||||||||||||||||||||||    
T  14195233 ctctctctaacactcattctcttattggatgaaagtcatgcctgtgggtaccacacattggaaatg 14195298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 16895274 - 16895334
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatc 123  Q
    ||||||||||| ||||||||||  | ||||| |||||| ||||||| |||| |||||||||    
T  16895274 tctaacactcactctcttattgaatcaaattcatgtggataccacatattgaaaatggatc 16895334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 33417837 - 33417757
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 138  Q
    |||| |||| |||||| ||| |||||| |||||||| |||| ||  | |||| ||||||||| | ||||||||||||||||    
T  33417837 ctctctctagcactcactcttttattgagtgaaattaatgtaggacctacactttggaaatgaaacccacataaagtggtg 33417757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 24886065 - 24886223
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |     
T  24886065 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgtaaatagatcccacataaagcggtgagacccacatgagtttcac 24886164  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 220  Q
    ||||||||| | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||    
T  24886165 ccaataggagagtgagtgttag----agagagtgctagaaagagagtgttcttagcatttctc 24886223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 19078939 - 19079059
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  19078939 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 19079038  T
Q  158 ccaataggacaatgagtgtta 178  Q
    ||||||||| | |||||||||    
T  19079039 ccaataggagagtgagtgtta 19079059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 19126827 - 19126947
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  19126827 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcac 19126926  T
Q  158 ccaataggacaatgagtgtta 178  Q
    ||||||||| | |||||||||    
T  19126927 ccaataggagagtgagtgtta 19126947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 29068111 - 29068264
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaat 162  Q
    ||||||||||| | | ||||||||||||||   ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||    
T  29068111 tctaacactcactattttattgggtgaaatacgtgtgggtaccacacattggaaattgatcccacataaaatggtgagacccacatgagtttcatccaat 29068210  T
Q  163 aggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 220  Q
    |||| | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||    
T  29068211 aggagagtgagtgttag----agagagtgctagaaagagagtgttcctagcatttctc 29068264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 932007 - 932115
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||||| ||||||||  ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||     
T  932007 ctctttgtaacactcgctctctaattgggtgaaattcatgtggataccacacattggaaatggatcccacataaagtggtgagacccacgtaagttttac 932106  T
Q  158 ccaatagga 166  Q
    | |||||||    
T  932107 caaatagga 932115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 31602087 - 31602207
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| ||||||||||| ||||| | ||||||||  ||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||    
T  31602087 ctctctctaacactcattctcttattggatgaaactcatgtgggtctcacactttggaaatggatcccacctaaagtggtgagacccacatgtgtttcat 31602186  T
Q  158 ccaataggacaatgagtgtta 178  Q
    |||||| || | |||||||||    
T  31602187 ccaataagagagtgagtgtta 31602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 14562680 - 14562565
Alignment:
Q  63 tctaacactcaa-tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaa 161  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | | ||| |||||| || |||    
T  14562680 tctaacactcaactctcttattgagtgaaatttatgtaggtaccacactttggaaatggatcccacataaagtggtgaca-ctacaagagtttcattcaa 14562582  T
Q  162 taggacaatgagtgtta 178  Q
    ||||| | |||||||||    
T  14562581 taggagagtgagtgtta 14562565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 11709731 - 11709656
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaag 133  Q
    |||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  11709731 ctctctctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 16173053 - 16173156
Alignment:
Q  75 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagt 174  Q
    ||||||||||||||||||  |||||| |||| ||||||||||||| |||||||||| || ||||||| ||||||| |||| | ||||||||| | |||||    
T  16173053 tctcttattgggtgaaatccatgtgg-taccccacattggaaatgaatcccacatatagaggtgagatccacatgggtttcacccaataggagagtgagt 16173151  T
Q  175 gttag 179  Q
    |||||    
T  16173152 gttag 16173156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 52444512 - 52444448
Alignment:
Q  75 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgag 140  Q
    |||||||||||||||| | |||||||||||||||| || ||||||||||||||| |||||||||||    
T  52444512 tctcttattgggtgaa-tctatgtgggtaccacactttcgaaatggatcccacagaaagtggtgag 52444448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 43275925 - 43275838
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 150  Q
    |||||||| || ||| |||||||||| |||  |||||||||||| |  || ||||||||||||||||||| | |||||||||||||||    
T  43275925 tctaacacacactcttttattgggtggaatccatgtgggtaccagattttcgaaatggatcccacataaaatcgtgagacccacatga 43275838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 17642388 - 17642497
Alignment:
Q  67 acactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagga 166  Q
    ||||||| | ||||||| | ||||||  |||||||||||||||||| ||||||||||  |||||||||| |||||  || || ||||| ||||||||| |    
T  17642388 acactcattttcttattagctgaaatacatgtgggtaccacacattagaaatggatcatacataaagtgatgaga--catataagtttcatccaatagta 17642485  T
Q  167 caatgagtgtta 178  Q
     | |||||||||    
T  17642486 gagtgagtgtta 17642497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 8050121 - 8050003
Alignment:
Q  61 tttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatcca 160  Q
    |||| |||| ||| ||||||||| ||||||||  || ||| ||||||||||  || |||||||| | |||||||||||||||||| |||| ||| |||      
T  8050121 tttcgaacattcactctcttattaggtgaaatcaatatggataccacacatgagacatggatccgatataaagtggtgagacccaaatgaatttcatcat 8050022  T
Q  161 ataggacaatgagtgttag 179  Q
    |||| | ||||||| ||||    
T  8050021 atagaaaaatgagtattag 8050003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 11135894 - 11135814
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 138  Q
    |||| |||| |||||| ||| ||||||||||||||  |||| ||  | |||| ||||||||||| ||||||||||||||||    
T  11135894 ctctctctagcactcactcttttattgggtgaaatcaatgtaggacctacactttggaaatggaacccacataaagtggtg 11135814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 19079073 - 19079022
Alignment:
Q  51 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 102  Q
    ||||||||||||| ||||||||| |||| |||||||||||| | ||||||||    
T  19079073 gaacactctctttttaacactcactctcctattgggtgaaactcatgtgggt 19079022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 19126961 - 19126910
Alignment:
Q  51 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 102  Q
    ||||||||||||| ||||||||| |||| |||||||||||| | ||||||||    
T  19126961 gaacactctctttttaacactcactctcctattgggtgaaactcatgtgggt 19126910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 24733928 - 24733971
Alignment:
Q  113 ggaaatggatcccacataaagtggtgagacccacatgagtttta 156  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||    
T  24733928 ggaaatggatccaacataaagtggtgagatccacatgggtttta 24733971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 31602136 - 31602093
Alignment:
Q  136 gtgagacccacatgagttttatccaataggacaatgagtgttag 179  Q
    ||||||||||||||||||| |||||||| || ||||||||||||    
T  31602136 gtgagacccacatgagtttcatccaataagagaatgagtgttag 31602093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 24733817 - 24733862
Alignment:
Q  111 ttggaaatggatcccacataaagtggtgagacccacatgagtttta 156  Q
    |||||||||||||| |||||||||||||||| | ||||| ||||||    
T  24733817 ttggaaatggatccaacataaagtggtgagatcgacatgggtttta 24733862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 48863755 - 48863795
Alignment:
Q  52 aacactctctttctaacactcaatctcttattgggtgaaat 92  Q
    ||||| ||||||||||||||||  |||||||||||||||||    
T  48863755 aacacactctttctaacactcaccctcttattgggtgaaat 48863795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 30892135 - 30892295
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||||||||||||||| ||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||| |     
T  30892135 ctctttctaacactcactctcttattcggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagactcatatgagtttcac 30892234  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctctt 222  Q
    ||||||||| | ||||||||||    ||| ||||||||||||||||| ||| || ||||||||||    
T  30892235 ccaataggagagtgagtgttag----agagagtgctagaaagagagtgttcctagcatttctctt 30892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 17190769 - 17190604
Alignment:
Q  53 acactctctttctaacactcaat--ctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 150  Q
    ||||| ||||||||||||||  |  ||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  17190769 acactttctttctaacactctctttctcttgttgggtgaaattcatgcgggtaccacacattagaaatggatcccacataaagtggtgagacccacataa 17190670  T
Q  151 gttttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 220  Q
    |||| | | ||||||| | ||||||||||    ||| ||||||||||||||||| |||||| ||||||||    
T  17190669 gtttcacctaataggaaagtgagtgttag----agagagtgctagaaagagagtgttcatagcatttctc 17190604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 18237294 - 18237168
Alignment:
Q  53 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 152  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |    
T  18237294 acactctctttctaacactcactcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgagacccacatgaat 18237195  T
Q  153 tttatccaataggacaatgagtgttag 179  Q
    || | |||| ||||   ||||||||||    
T  18237194 ttcacccaagaggaaggtgagtgttag 18237168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 42958466 - 42958624
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||| ||| | | ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  42958466 ctctctctaacagtcacttttttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgagacccgcatgagtttcat 42958565  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 220  Q
    ||||||| | | ||||||||||    ||  ||||||||||||||||| ||| || ||||||||    
T  42958566 ccaatagaaaagtgagtgttag----agtgagtgctagaaagagagtgttcctagcatttctc 42958624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 5990664 - 5990513
Alignment:
Q  66 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagg 165  Q
    |||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||| |    
T  5990664 aacactcactcttttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgagacccacatgtatttaatccaatatg 5990565  T
Q  166 acaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctct 221  Q
    | | ||||||||||    ||| ||||||| ||||||||  ||| || |||||||||    
T  5990564 agagtgagtgttag----agagagtgctaaaaagagagcgttcttagcatttctct 5990513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 32153850 - 32153741
Alignment:
Q  54 cactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtt 153  Q
    |||||||||||||||||||| |||||||||||||||||   |||||| | |||||| |||||||||||||||||||||||||||||||||||||||  ||    
T  32153850 cactctctttctaacactcactctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgagacccacatggatt 32153751  T
Q  154 ttatccaata 163  Q
    |||| |||||    
T  32153750 ttattcaata 32153741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 41020326 - 41020240
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 149  Q
    |||||||| || |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  41020326 tctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgagacccacatg 41020240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 34321022 - 34320922
Alignment:
Q  49 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 148  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||  |||||| ||||| || ||| |||| ||||||||||||||||||||||| |||||    
T  34321022 atgaacactctctttttaacactcattctcttgttgggtgaaatccatgtggataccatactttgaaaatagatcccacataaagtggtgagactcacat 34320923  T
Q  149 g 149  Q
    |    
T  34320922 g 34320922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 28436556 - 28436460
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    |||||||||||| ||| ||||| ||||||||||||| |||||| |||||||| || ||||||||| ||  |||||||||||||| | ||| ||||||    
T  28436556 ctctttctaacattcactctctaattgggtgaaattcatgtggttaccacacttttgaaatggattccgtataaagtggtgagatctacacgagttt 28436460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 10393878 - 10393791
Alignment:
Q  53 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgag 140  Q
    ||||||| |||||||||||   | ||||||||||||||||| |||||||||| |||||||| ||||  |||||||||||||| |||||    
T  10393878 acactctatttctaacacttgctttcttattgggtgaaattcatgtgggtactacacattgaaaataaatcccacataaagtagtgag 10393791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 27726818 - 27726902
Alignment:
Q  53 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggt 137  Q
    ||||||||||||  ||||||| ||| ||||||||||||||| |||||||| | |||| |||||||||| ||||||  ||||||||    
T  27726818 acactctctttcctacactcactcttttattgggtgaaattaatgtgggtcctacactttggaaatgggtcccactcaaagtggt 27726902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 2976559 - 2976650
Alignment:
Q  75 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagga 166  Q
    ||||||||||||| ||||| |||||| ||| | ||||||||||| ||||  | ||||| | || ||||||||||| ||||||||||||||||    
T  2976559 tctcttattgggtaaaattcatgtggatactatacattggaaattgatctaatataaaattgtaagacccacatgggttttatccaatagga 2976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 40699622 - 40699511
Alignment:
Q  69 actcaatctcttattggg-tgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggac 167  Q
    ||||| |||||||||||| |||||   ||||||||  || || |||||||||||||||| ||||||| |||||||||||||| |||| | |||||| ||     
T  40699622 actcagtctcttattggggtgaaacccatgtgggtctcatactttggaaatggatcccaaataaagtagtgagacccacatgggtttcacccaataagaa 40699523  T
Q  168 aatgagtgttag 179  Q
    | ||||||||||    
T  40699522 agtgagtgttag 40699511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 41746230 - 41746132
Alignment:
Q  49 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 148  Q
    ||||||| ||||||||||||||||| ||| |||||| |||||||| |  || ||  ||| | ||||||||  |||||||||||||||||||||||| |||    
T  41746230 atgaacattctctttctaacactcactcttttattgagtgaaattca--tgagtctcacgctttggaaatccatcccacataaagtggtgagacccgcat 41746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 26435319 - 26435420
Alignment:
Q  77 tcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgt 176  Q
    ||||||||| ||||||| ||||||| ||| ||| |||||||  | || |||||||||||||||||||||| | | ||| | ||||||||| | |||||||    
T  26435319 tcttattggatgaaattcatgtgggcaccgcactttggaaagag-tctcacataaagtggtgagacccacgtaaatttcacccaataggagagtgagtgt 26435417  T
Q  177 tag 179  Q
    |||    
T  26435418 tag 26435420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 26435432 - 26435382
Alignment:
Q  52 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 102  Q
    |||||||| ||||||||||||| |||| |||||||||||||||| ||||||    
T  26435432 aacactctttttctaacactcactctcctattgggtgaaatttacgtgggt 26435382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 16875283 - 16875364
Alignment:
Q  51 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaa 132  Q
    |||||||||||||| | ||||||| |||||||||||| ||||| ||| |||| |||| | |||||  ||| |||||||||||    
T  16875283 gaacactctctttccagcactcaacctcttattgggtaaaattaatgcgggtcccactctttggacgtgggtcccacataaa 16875364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 2406004 - 2406072
Alignment:
Q  66 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagt 134  Q
    |||||||| ||| |||||||||||||| ||||||||| |||||| ||| | ||||  ||||||||||||    
T  2406004 aacactcattcttttattgggtgaaatctatgtgggttccacactttgaagatggcacccacataaagt 2406072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 34457661 - 34457748
Alignment:
Q  75 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 163  Q
    |||||| ||| || ||||||||||||||| | ||  ||  |||||||||||||||||||| |||||| |||| | ||||||||||||||    
T  34457661 tctcttgttgagtaaaatttatgtgggtatcgcattttaaaaatggatcccacataaagttgtgagatccacct-agttttatccaata 34457748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 40699498 - 40699538
Alignment:
Q  51 gaacactctctttctaacactcaatctcttattgggtgaaa 91  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  40699498 gaacactctctttctaacactcactttcttattgggtgaaa 40699538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 26072253 - 26072174
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagac 142  Q
    |||| |||||| ||| |||||||||||||   |||||||  | |||| ||||||||| || |||||||||||||||||||    
T  26072253 tctagcactcactcttttattgggtgaaaacaatgtgggacctacactttggaaatgaattccacataaagtggtgagac 26072174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 1249102 - 1249028
Alignment:
Q  89 aaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 163  Q
    |||||||||||| ||| |||| ||||||||||| ||||  ||||||| |||||| ||||||  ||| ||||||||    
T  1249102 aaatttatgtggttacgacactttggaaatggaccccatgtaaagtgatgagactcacatggatttcatccaata 1249028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 6198663 - 6198601
Alignment:
Q  79 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 141  Q
    ||||||||||||||  |||||||| |||||| ||| |||||| | ||||||||||| ||||||    
T  6198663 ttattgggtgaaatcgatgtgggtcccacactttgaaaatgggttccacataaagtcgtgaga 6198601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 42224626 - 42224696
Alignment:
Q  68 cactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 138  Q
    |||||| ||| ||||||||||||||  |||| ||  | |||| ||||||||||| ||||||||||||||||    
T  42224626 cactcactcttttattgggtgaaatcaatgtaggacctacactttggaaatggaacccacataaagtggtg 42224696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 18237153 - 18237206
Alignment:
Q  49 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggt 102  Q
    |||||||||||||||||||||||||   || | |||||||||||| ||||||||    
T  18237153 atgaacactctctttctaacactcaccttcctcttgggtgaaattcatgtgggt 18237206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 22524436 - 22524395
Alignment:
Q  61 tttctaacactcaatctcttattgggtgaaatttatgtgggt 102  Q
    ||||||||||||| ||||||||||||||||||  ||||||||    
T  22524436 tttctaacactcactctcttattgggtgaaatacatgtgggt 22524395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 9693485 - 9693437
Alignment:
Q  115 aaatggatcccacataaagtggtgagacccacatgagttttatccaata 163  Q
    |||| |||||||||||| |||||||||||| || ||||||| |||||||    
T  9693485 aaatagatcccacataatgtggtgagaccctcacgagttttgtccaata 9693437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 38732427 - 38732504
Alignment:
Q  75 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    |||||||||| ||||||||||||||| |||||||  ||  |||| | ||  ||||||||||||||||  |||||||||||    
T  38732427 tctcttattgagtgaaatttatgtggataccacaatttaaaaataggtctaacataaagtggtgaga--cacatgagttt 38732504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 557535 - 557409
Alignment:
Q  53 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 152  Q
    ||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  557535 acactctctttctaacactcactctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgagacccacatgagt 557436  T
Q  153 tttatccaataggacaatgagtgttag 179  Q
    || | |||||||   ||||||||||||    
T  557435 ttcacccaatagattaatgagtgttag 557409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 39237689 - 39237784
Alignment:
Q  59 tctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    |||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39237689 tctttccaacactcactcttttattgggtgaagtttatgtgggtaccacacattggaaatggatcccatataaagtggtgagacccacatgagttt 39237784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 47822007 - 47822128
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| |||  |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |     
T  47822007 ctctctctaacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcac 47822106  T
Q  158 ccaataggacaatgagtgttag 179  Q
    ||||||| | | ||||||||||    
T  47822107 ccaatagaagagtgagtgttag 47822128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 36738485 - 36738643
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccaca-----cattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    ||||||| ||| |||||||||| |||||||| ||| ||||||||||     | |||||||||||||||||||||||||||||||||||||||||||| |     
T  36738485 tctaacattcactctcttattgagtgaaattcatgcgggtaccacaacacacgttggaaatggatcccacataaagtggtgagacccacatgagtttcac 36738584  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 220  Q
    ||||||||| | ||||||||||  ||||  ||||||| ||||||||| ||| |||||||||||    
T  36738585 ccaataggagagtgagtgttag--aaag--agtgctaaaaagagagtgttcttaacatttctc 36738643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 41873577 - 41873427
Alignment:
Q  70 ctcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaa 169  Q
    |||| ||| |||||||||||| || |||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||| | ||||||  | |     
T  41873577 ctcactcttttattgggtgaagttcatgtgggtaccacacattagaaatggaacccacataaagtgatgagactcacatgagtttcacccaataaaaaag 41873478  T
Q  170 tgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctcttat 224  Q
    ||||||||||    ||| ||||||||||||||||| ||| || ||||||||||||    
T  41873477 tgagtgttag----agagagtgctagaaagagagtgttcctagcatttctcttat 41873427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 43930112 - 43929994
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||| | ||||||    
T  43930112 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcaca-ataaagtggtgaga-ccacattaattttat 43930015  T
Q  158 ccaataggacaatgagtgtta 178  Q
    |||||| |||||||| |||||    
T  43930014 ccaataagacaatgaatgtta 43929994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 17878725 - 17878827
Alignment:
Q  75 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagt 174  Q
    ||||||||||||||||| | ||||||||| |||||||| ||||| |||||||||||||||||||||| | |||||||||| | | ||||||| |||||||    
T  17878725 tctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagatcgacatgagtttcagctaataggagaatgagt 17878824  T
Q  175 gtt 177  Q
    |||    
T  17878825 gtt 17878827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 42815604 - 42815743
Alignment:
Q  79 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgtta 178  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||| | | |||| ||   |||||        
T  42815604 ttattgggtgaaattcatgtgggtaccgcacattgaaaatggattccccataaagtggtgagacccacatgagtttcacctaataagagggtgagt---- 42815699  T
Q  179 gttaaagaaagtgctagaaagagagtcttcataacatttctctt 222  Q
    |||||||| |||| |||||||||||| ||| || ||||||||||    
T  42815700 gttaaagagagtgttagaaagagagtgttcctagcatttctctt 42815743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 45508657 - 45508529
Alignment:
Q  49 atgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 148  Q
    |||||||||||||  |||||||||  | |||||||||| |||||| |||||||||  ||||||||  |||||||||||| |||||||||||||||||| |    
T  45508657 atgaacactctct--ctaacactccctttcttattgggcgaaattcatgtgggtatgacacattgagaatggatcccacgtaaagtggtgagacccacgt 45508560  T
Q  149 gagttttatccaataggacaatgagtgttag 179  Q
    | |||| | ||||||| | ||||||||||||    
T  45508559 gggtttcacccaatagaagaatgagtgttag 45508529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 48745352 - 48745290
Alignment:
Q  87 tgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 149  Q
    |||||||||||||| |||||||||||| |||||||||||||||||| || |||||||||||||    
T  48745352 tgaaatttatgtggataccacacattgcaaatggatcccacataaattgatgagacccacatg 48745290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 29310535 - 29310470
Alignment:
Q  98 tgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 163  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  29310535 tgggtcccacactatggaaatggatcccacataaagtggtgagacccacatgagtttcacccaata 29310470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 32377386 - 32377306
Alignment:
Q  83 tgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaata 163  Q
    |||||||||||||  |||||| ||||||||| |||| |||||||||||||||||| ||||| |||| | ||||||||||||    
T  32377386 tgggtgaaatttacatgggtatcacacattgaaaatcgatcccacataaagtggtaagacctacataaattttatccaata 32377306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 25695904 - 25696012
Alignment:
Q  55 actctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    ||||||||| ||||| ||||||| ||||||  ||||||| ||| |  ||||||| ||| |||||||| | |||||||| |||||||| ||||||||||||    
T  25695904 actctctttttaacattcaatcttttattgtatgaaattcatgcgaataccacatattagaaatggacctcacataaaatggtgagatccacatgagttt 25696003  T
Q  155 tatccaata 163  Q
     | ||||||    
T  25696004 cacccaata 25696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 16082817 - 16082870
Alignment:
Q  97 gtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 150  Q
    |||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||    
T  16082817 gtgggtaccacatattggaagtggattccacataaagaggtgagacccacatga 16082870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 46947903 - 46947819
Alignment:
Q  69 actcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    ||||| |||||||| |||||||| | |||||| | |||||| ||| ||||| ||||| ||||||||||||||||||||||| ||||    
T  46947903 actcactctcttatagggtgaaactcatgtggtt-ccacactttgaaaatgcatcccgcataaagtggtgagacccacatgggttt 46947819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 49160401 - 49160314
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 145  Q
    |||| ||||||||| | | | ||||||| |||||| ||| || |||| |||||||| |||||||||||| |||||||| |||||||||    
T  49160401 ctctctctaacacttactttattattggatgaaatctatctgagtactacacattgaaaatggatcccaaataaagtgttgagaccca 49160314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 3399124 - 3399043
Alignment:
Q  77 tcttattgggtgaaatttatgtgggtac----cacacattggaaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    |||||||| |||||||| |||||||||     ||||||||| ||||  |||  |||||||||||||||||||||||||||||    
T  3399124 tcttattgagtgaaattcatgtgggtatataacacacattgaaaataaatcttacataaagtggtgagacccacatgagttt 3399043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 26703465 - 26703549
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagac 142  Q
    |||| |||| |||||| ||| ||||||||||||||  |||| ||  | |||| || |||||||| ||||||||||||||||||||    
T  26703465 ctctctctagcactcactcttttattgggtgaaataaatgtaggacctacactttagaaatggaacccacataaagtggtgagac 26703549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 32000514 - 32000434
Alignment:
Q  52 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtacca-cacattggaaatggatcccacataa 131  Q
    ||||| || ||| ||||||||| ||||||||||||||||||  |||||||| ||| ||||||| |||||||  ||||||||    
T  32000514 aacacactatttttaacactcactctcttattgggtgaaatacatgtgggttccaccacattgaaaatggacgccacataa 32000434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 22159050 - 22159085
Alignment:
Q  55 actctctttctaacactcaatctcttattgggtgaa 90  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22159050 actctctttctaacactcattctcttattgggtgaa 22159085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 22217758 - 22217793
Alignment:
Q  55 actctctttctaacactcaatctcttattgggtgaa 90  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22217758 actctctttctaacactcattctcttattgggtgaa 22217793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 19840910 - 19840994
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagac 142  Q
    |||| |||| |||||| ||| ||||||||||||||  || | ||  | |||| ||||||||||| ||||||||||||||| ||||    
T  19840910 ctctctctagcactcactcttttattgggtgaaatcaatataggacctacactttggaaatggaacccacataaagtggtaagac 19840994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 22786258 - 22786222
Alignment:
Q  106 acacattggaaatggatcccacataaagtggtgagac 142  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  22786258 acactttggaaatggaacccacataaagtggtgagac 22786222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 36738612 - 36738568
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggt 102  Q
    |||||||||||||||| |||| |||||||||||| | ||||||||    
T  36738612 ctctttctaacactcactctcctattgggtgaaactcatgtgggt 36738568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 45909611 - 45909531
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 138  Q
    |||| ||||||||||| ||| ||||||||| ||||  |||| ||  | |||  ||||||||||| ||||||||||||||||    
T  45909611 ctctctctaacactcactcttttattgggtaaaatcaatgtaggacctacaatttggaaatggaacccacataaagtggtg 45909531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 32439504 - 32439646
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |||| ||    
T  32439504 ctctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatcccacataaagcggtgagccccacttgggtttcat 32439603  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagt 204  Q
    ||||||| | ||| ||||||||    ||| |||||||||||||||||    
T  32439604 ccaatagaaaaataagtgttag----agagagtgctagaaagagagt 32439646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 7447718 - 7447561
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||| ||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |     
T  7447718 ctctctctaaca-tcactctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgagacccacatgagcttcac 7447620  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 220  Q
    |||||||||    | ||| | |||| ||| | ||||||||||||||| ||| |||||||||||    
T  7447619 ccaatagga----gggtgattgttatagagaatgctagaaagagagtgttcctaacatttctc 7447561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 17221646 - 17221547
Alignment:
Q  76 ctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtg 175  Q
    |||||||||| ||||||| |||| ||||||| |||||| |||| ||||||||||||||||||||| ||||| ||| ||| | | |||| || ||||||||    
T  17221646 ctcttattggatgaaattcatgtaggtaccatacattgaaaatagatcccacataaagtggtgagtcccacttgaatttcacctaataagagaatgagtg 17221547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 178
Target Start/End: Complemental strand, 30480018 - 30479895
Alignment:
Q  56 ctctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaa-tggatcccacataaagtggtgagacccacatgagttt 154  Q
    |||||||||||| ||| | ||| ||||| ||| | ||| ||||||||| ||||| || || | |||||||||||||||||||| ||||||||||  ||||    
T  30480018 ctctctttctaatacttactcttttatttggtaatattcatgtgggtatcacacttttgatactggatcccacataaagtggtaagacccacatatgttt 30479919  T
Q  155 tatccaataggacaatgagtgtta 178  Q
    ||  |||||||| ||||| |||||    
T  30479918 tactcaataggagaatgaatgtta 30479895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 28030569 - 28030612
Alignment:
Q  117 atggatcccacataaagtggtgagacccacatgagttttatcca 160  Q
    |||||||||||||||||| |||||||||||||| |||| |||||    
T  28030569 atggatcccacataaagttgtgagacccacatgggtttcatcca 28030612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 28030726 - 28030642
Alignment:
Q  63 tctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccaca 147  Q
    ||||||| ||| | ||||||| |||| |||  |||||||||| |||  ||| ||||||||| ||||||| || ||||||||||||    
T  28030726 tctaacattcactttcttattaggtgtaatccatgtgggtacaacattttgaaaatggatctcacataatgttgtgagacccaca 28030642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 48543288 - 48543138
Alignment:
Q  66 aacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaatagg 165  Q
    |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||    
T  48543288 aacactcactctcttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaatagg 48543189  T
Q  166 acaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 220  Q
    | | ||||||||||    ||  ||||||||||||||||| ||| || ||||||||    
T  48543188 agagtgagtgttag----agtgagtgctagaaagagagtgttcttagcatttctc 48543138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 54187082 - 54186924
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||| |     
T  54187082 ctctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagattcacatgagtttcac 54186983  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttctc 220  Q
    ||||||||| | ||| ||||||    ||| |||| |||||||||||| ||| || ||||||||    
T  54186982 ccaataggagagtgaatgttag----agagagtgttagaaagagagtgttcttagcatttctc 54186924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 58 - 217
Target Start/End: Original strand, 29235675 - 29235832
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||||||| ||||||||||||||||||| ||| || ||||||||||| ||||||||||| ||||||||||||||||| || |||||||| |     
T  29235675 ctctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgagactcatatgagtttcac 29235774  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacattt 217  Q
    ||||||||| | ||| |||  |||| |||  |||||||||||||||| ||| ||||||||    
T  29235775 ccaataggaaagtgaatgt--gttagagagggtgctagaaagagagtgttcctaacattt 29235832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 13639430 - 13639536
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||||| ||| ||| ||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |     
T  13639430 ctctctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgagacccacatgagtttcac 13639529  T
Q  158 ccaatag 164  Q
    |||||||    
T  13639530 ccaatag 13639536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 38602836 - 38602967
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttat 157  Q
    |||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |     
T  38602836 ctctctctaatactcactcttttattcggtaaaatttatgtgggtaccacacattgaaaatggatcccacataaagtagtgagactcacatgagtttcac 38602935  T
Q  158 ccaataggacaatgagtgttagttaaagaaagtg 191  Q
    ||||||||| | |||||| |||  ||||||||||    
T  38602936 ccaataggagagtgagtgctag--aaagaaagtg 38602967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 46893517 - 46893391
Alignment:
Q  38 tgaggagtatcatgaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggt 137  Q
    |||||||| | ||| |||||||||  |||||||||| |||||||||   ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  46893517 tgaggagtgttatggacactctct--ctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggt 46893420  T
Q  138 gagacccacatgagttttatccaatagga 166  Q
    |||||  | |||||||| |||||| ||||    
T  46893419 gagacgaagatgagtttcatccaacagga 46893391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 50320436 - 50320597
Alignment:
Q  53 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagt 152  Q
    ||||||||||||||||| | | |||||||||||||||| || || |||||| |||||||| ||||| ||||||||||||| ||||||||| || ||||||    
T  50320436 acactctctttctaacatttattctcttattgggtgaagttcatatgggtatcacacattagaaat-gatcccacataaaatggtgagactcatatgagt 50320534  T
Q  153 tttatccaataggacaatgagtgttagttaaagaaagtgctagaaagagagtcttcataacatttct 219  Q
    || || |||||| | | ||||||||||    ||| ||||||||||||| ||| ||| || |||||||    
T  50320535 ttcattcaatagaagagtgagtgttag----agagagtgctagaaagaaagtgttcctagcatttct 50320597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 20909429 - 20909325
Alignment:
Q  75 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagt 174  Q
    ||||||||||||||||||| | ||||| |||||  |||| |||||||||||||||||||||||||||||||||||||||| | |||| |||| | | |||    
T  20909429 tctcttattgggtgaaattcaggtgggcaccacctattgaaaatggatcccacataaagtggtgagacccacatgagtttcacccaaaaggagagtaagt 20909330  T
Q  175 gttag 179  Q
    |||||    
T  20909329 gttag 20909325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 28215881 - 28215775
Alignment:
Q  57 tctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttta 156  Q
    |||||||||||||| || ||||||||||||||||| | | ||||||  ||||| ||||||||||| ||| ||||||||| |||||||||||||||||| |    
T  28215881 tctctttctaacacccactctcttattgggtgaaactcacgtgggtctcacactttggaaatggaccccgcataaagtgatgagacccacatgagtttca 28215782  T
Q  157 tccaata 163  Q
     ||||||    
T  28215781 cccaata 28215775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 42780698 - 42780789
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatg 149  Q
    |||| ||||||||||| ||||||||||| ||||||  |||| |||  ||||| | | |||||||||||||||||||||||||||||||||||    
T  42780698 ctctctctaacactcattctcttattggatgaaatccatgtaggtctcacacttagaaaatggatcccacataaagtggtgagacccacatg 42780789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 46156780 - 46156684
Alignment:
Q  52 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 150  Q
    ||||||||||||  |||||||| ||| ||||||||||||||   ||||||  | |||||| ||||| || |||||||||||||||||||||||| ||||    
T  46156780 aacactctcttt--aacactcactcttttattgggtgaaatcgttgtggggcctacacataggaaaagggtcccacataaagtggtgagacccatatga 46156684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 45800738 - 45800801
Alignment:
Q  53 acactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaat 118  Q
    ||||||| ||||||||||||| ||| |||||||||||||  ||||||||||||||||||| |||||    
T  45800738 acactctgtttctaacactcattcttttattgggtgaaa--tatgtgggtaccacacattagaaat 45800801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 27243200 - 27243120
Alignment:
Q  58 ctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 138  Q
    |||||||||| ||||| ||||| ||||||| ||||  ||||||||   |||| ||||||||||| ||||||||||||||||    
T  27243200 ctctttctaatactcactctctcattgggttaaatcaatgtgggtcatacactttggaaatggaacccacataaagtggtg 27243120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 26223256 - 26223190
Alignment:
Q  95 atgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttttatccaa 161  Q
    ||||||||| || | |||| ||||||||||||||||||||| ||||| |||||||| ||| ||||||    
T  26223256 atgtgggtaacatatattgaaaatggatcccacataaagtgatgagatccacatgaatttcatccaa 26223190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 357894 - 357833
Alignment:
Q  79 ttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgag 140  Q
    ||||||| ||||||  |||| ||||| |||| ||||||||||| ||||||||||||||||||    
T  357894 ttattggatgaaatcaatgtaggtactacactttggaaatggaacccacataaagtggtgag 357833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 3770541 - 3770586
Alignment:
Q  55 actctctttctaacactcaatctcttattgggtgaaatttatgtgg 100  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||    
T  3770541 actctctttccaacactcactctcttattgggtgaaattcatgtgg 3770586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 54140813 - 54140882
Alignment:
Q  110 attggaaatggatcccacataaagtggtgagacccacatgagttttatccaataggacaatgagtgttag 179  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||| | | |||| || | ||||||||||    
T  54140813 attggaaatggatcccacataaagtggtgagactcgcatgaatttcacctaataagagagtgagtgttag 54140882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 50661541 - 50661627
Alignment:
Q  52 aacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtg 138  Q
    ||||||||||||  |||||||  ||| ||||||||| ||||  ||||||||   |||  ||||||||||| ||||||||||||||||    
T  50661541 aacactctcttttgaacactctttcttttattgggttaaatcaatgtgggtcatacattttggaaatggaacccacataaagtggtg 50661627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 1741372 - 1741335
Alignment:
Q  126 acataaagtggtgagacccacatgagttttatccaata 163  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  1741372 acataaagtggtgagacccacatgagtttaatctaata 1741335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 1717764 - 1717828
Alignment:
Q  77 tcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 141  Q
    |||||||  |||||||| |||||| || || | ||||||||||||||  ||||||||||||||||    
T  1717764 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcatacataaagtggtgaga 1717828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 710 - 789
Alignment:
Q  75 tctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagttt 154  Q
    |||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  710 tctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgagacccacatgagttt 789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 178
Target Start/End: Complemental strand, 28458 - 28331
Alignment:
Q  51 gaacactctctttctaacactcaatctcttattgggtgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatga 150  Q
    |||||| ||||||| ||||| || ||||||||||||||||||  |||||||| |||||| ||| |||||| ||||||||||| || || |||||||||      
T  28458 gaacacactctttccaacacccactctcttattgggtgaaatcaatgtgggtcccacactttgaaaatgggtcccacataaattgatgggacccacattg 28359  T
Q  151 gttttatccaataggacaatgagtgtta 178  Q
     ||| |||||||| || | |||||||||    
T  28358 atttcatccaataagaaagtgagtgtta 28331  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 17925 - 17985
Alignment:
Q  87 tgaaatttatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacat 148  Q
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T  17925 tgaaatttatgtaggtaccaaactttggaaagggat-ccacataaagtggttaaacccacat 17985  T

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