View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_24 (Length: 390)
Name: NF20076_low_24
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 28 - 374
Target Start/End: Original strand, 40187842 - 40188189
Alignment:
| Q |
28 |
taattaattaattatatgccacaaggttttgaaatgattatataagctaaggcatgtcaagcatacgt-ggttggtccagttgataaggattcaattctt |
126 |
Q |
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| T |
40187842 |
taattaattaattatatgccacaaggttttgaaataattatataagctaaggcatgtcaagcatacgttggttggtccagttgataagaattcaattctt |
40187941 |
T |
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| Q |
127 |
acaaggacctgagtttgaatcttgttgccgatgtgaggatctcattgatagatatataaaatgtaattaatcatgtcaacaatctaacaactttgaggct |
226 |
Q |
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| T |
40187942 |
acaaggatctgagtttgaatcttgttgccgatgtgaggatctcattgacggatatataagatataagtagtcatgtcaacaatctattaactttgaggct |
40188041 |
T |
|
| Q |
227 |
tttgactctgatgagttcccgagactcgactcgtctaaactttaattcatatatnnnnnnngacaaggtacatcaaacaggtggttgaacactattatta |
326 |
Q |
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| T |
40188042 |
tttaactctgatgagttcccgagactcaactcgtttaaactttaattcatatataaaaaaagacaaggtacatcaaacaggtggttgaacactattatta |
40188141 |
T |
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| Q |
327 |
gctttagctctaatcatgttggctttacgtgtgactctaacatgatac |
374 |
Q |
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| T |
40188142 |
gctttagctctaatcatgttggctttacgtgtgactctaacatgatac |
40188189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 8108914 - 8108959
Alignment:
| Q |
127 |
acaaggacctgagtttgaatcttgttgccgatgtgaggatctcatt |
172 |
Q |
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| T |
8108914 |
acaagaacctgagtttgaatcttattgccaatgtgaggacctcatt |
8108959 |
T |
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