View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_25 (Length: 388)
Name: NF20076_low_25
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 40098600 - 40098977
Alignment:
| Q |
1 |
agaaagagtttttaattatattttgtttgaccagtatgttagtatgatattgcttattctgaaattatgtgaatgtgattagtatatgatattaggtaaa |
100 |
Q |
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| T |
40098600 |
agaaagagtttttaattatattttgtttgaccattatgttagtatgatattgcttattctgaaattatgtgaatgtgattagtat--gatattaggtaaa |
40098697 |
T |
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| Q |
101 |
ctatattatcggggtctagtttctatccaattgtccgttatatatatcatgagatttgacttggacttgatcgatcttgtttggagttgagctatttatt |
200 |
Q |
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| T |
40098698 |
ctatattatcgg-----------tatccaattgtcagttatatatatcatgagatttgacttggacttgatcgatcttgtttggagttgagctattattt |
40098786 |
T |
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| Q |
201 |
aatt--aagattag--------gattgatgataagttttaatttctcagtgaatctaggttgtcctccaatattatttaattattttgtttactggcctt |
290 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40098787 |
tttttgaagattaggaatttaggattgatgataagttttaatttctcagtgaatctaggttgtcctccaatattatttaattattttgtttactggcctt |
40098886 |
T |
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| Q |
291 |
gccgtcttggcaaaactaatggtttaacaaggaaaagaaaattataattaagggtcaacttaatgtttttagaaataaggtgtagcatatt |
381 |
Q |
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| T |
40098887 |
gccgtcttggcaaaactaatggtttaacaaggaaaagaaaattataattaagggtcaacttaatgtttttagaaataaggtgtagcatatt |
40098977 |
T |
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