View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_26 (Length: 382)
Name: NF20076_low_26
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 61 - 370
Target Start/End: Original strand, 648850 - 649159
Alignment:
| Q |
61 |
ggggaaagaggggtgctccccttccccgaaaacaaaaaccacggtcttttggagaaaaaccgccatacttaatggtattcttcattttcgtgccttttca |
160 |
Q |
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| T |
648850 |
ggggaaagatgggtgcttcccttcaccgacaatcaaaatcacaggctattggaggaaaaccgccatacttaatggtattcttcattttcgtgcctgttca |
648949 |
T |
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| Q |
161 |
cccttcaattatcgttgaacatgcttgttgtaacatgcctaatagaagtatttgaagctataatagcttaccttcattaaaaaatannnnnnnnnnnnng |
260 |
Q |
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| T |
648950 |
cccttcaattatcgttgaacatgcttgttgtaacatgcctaatagaagtatttgaagctataatagcttaccttcattaaaaaatatttttttatttttg |
649049 |
T |
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| Q |
261 |
ttgaacacgtttgttgtaacgtgctcaaataggataagcattttaagctagaggagcatacctgcataaatcatatcttggtgactggaagtatttcctt |
360 |
Q |
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| T |
649050 |
ttgaacacgtttgttgtaacgtgctcaaataggataagcattttaagctagaagagcatacctgcataaatcatatcttggtgactggaagtatttcctt |
649149 |
T |
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| Q |
361 |
tatctaaact |
370 |
Q |
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|||||||||| |
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| T |
649150 |
tatctaaact |
649159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 239089 - 238985
Alignment:
| Q |
266 |
cacgtttgttgtaacgtgctcaaataggataagcattttaagctagaggagcatacctgcataaatcatatcttggtgactggaagtatttcctttatct |
365 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
239089 |
cacgtttgttgtaacatgctcaaataggataagcaatttaagctagaagagcatccctgcataaatcatatcttggtaactggaaatatttcctttatct |
238990 |
T |
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| Q |
366 |
aaact |
370 |
Q |
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||||| |
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| T |
238989 |
aaact |
238985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 686302 - 686334
Alignment:
| Q |
116 |
aaaaccgccatacttaatggtattcttcatttt |
148 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
686302 |
aaaacccccatacttaatggtattcttcatttt |
686334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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