View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_29 (Length: 370)
Name: NF20076_low_29
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 37838170 - 37838323
Alignment:
| Q |
1 |
ccttgccaactatttacttaaatgatcatgtttaaaatttagttgcctagctatttatttaacttgacagttacaccaaagcactcgttcttgactataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37838170 |
ccttgccaactatttacttaaatgatcatgtttaaaatttagttgcctagctatttatttaacttgacagttacaccaaagcactcgttcttgactataa |
37838269 |
T |
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| Q |
101 |
cgaaaactattcacggtcatcgataatataaaatcaaccacaacataaagcaaa |
154 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37838270 |
cgaaaactattcacggtcatcgacaatataaaatcaaccacaacataaagcaaa |
37838323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 37838416 - 37838531
Alignment:
| Q |
237 |
tggattaagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaaactgtatacaaaatttgttttgaggct |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37838416 |
tggattaagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaaactgtatacaaaatttgttttgaggct |
37838515 |
T |
|
| Q |
337 |
ccaccccatattgttt |
352 |
Q |
| |
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|||||||||||||||| |
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| T |
37838516 |
ccaccccatattgttt |
37838531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 37843979 - 37844094
Alignment:
| Q |
237 |
tggattaagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaaactgtatacaaaatttgttttgaggct |
336 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| ||| |||||| |
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| T |
37843979 |
tggaataagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaagcaggttacaaaatttatttagaggct |
37844078 |
T |
|
| Q |
337 |
ccaccccatattgttt |
352 |
Q |
| |
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|||||||||||||||| |
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| T |
37844079 |
ccaccccatattgttt |
37844094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 37843765 - 37843904
Alignment:
| Q |
14 |
ttacttaaatgatcatgtttaaaatttagttgcctagctatttatttaacttgacagttacaccaaagcactcgttcttgactataacgaaaactattca |
113 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||| |||||||||| |||| |||||||||| | |||||||||| | ||||||| ||||| |||||| |
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| T |
37843765 |
ttacttaaacgatcatgcttaaaatttagatgcttagctatttac----cttgtcagttacaccgatgcactcgttcataactataatgaaaattattca |
37843860 |
T |
|
| Q |
114 |
cggtcatcgataatataaaatcaaccacaacataaagcaaatag |
157 |
Q |
| |
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| |||| || || ||||||||| |||||||||||||||||||| |
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| T |
37843861 |
tgctcatggacaaaataaaatcagccacaacataaagcaaatag |
37843904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 38383945 - 38383831
Alignment:
| Q |
237 |
tggattaagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaaactgtatacaaaatttgttttgaggct |
336 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| | | |||||||| |||||||||||||| |
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| T |
38383945 |
tggattaagtcatacaaaa-tgagcataaattcaaattatactttgttcaacgaaattaaaagattgaatggaccaatatacaaagtttgttttgaggct |
38383847 |
T |
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| Q |
337 |
ccaccccatattgttt |
352 |
Q |
| |
|
|||||||||||||||| |
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| T |
38383846 |
ccaccccatattgttt |
38383831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 38392803 - 38392688
Alignment:
| Q |
237 |
tggattaagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaaactgtatacaaaatttgttttgaggct |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | | ||||||| |||||| ||||||| |
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| T |
38392803 |
tggattaagtcatacaaaaatgagcataaattcaaattatactttgttcaacgaaattaaaagattgaatggaccaatatacaatgtttgttctgaggct |
38392704 |
T |
|
| Q |
337 |
ccaccccatattgttt |
352 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
38392703 |
ccaccccatattgttt |
38392688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 240 - 352
Target Start/End: Complemental strand, 38401376 - 38401264
Alignment:
| Q |
240 |
attaagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaaactgtatacaaaatttgttttgaggctcca |
339 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
38401376 |
attaagtcatacgaaaatgagcataaattcaaatgatactttgttctaccaaattaaaagattgaatgaaacaatatacaatgtttgtattgaggctcca |
38401277 |
T |
|
| Q |
340 |
ccccatattgttt |
352 |
Q |
| |
|
|| | |||||||| |
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|
| T |
38401276 |
cctcctattgttt |
38401264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 38384165 - 38384021
Alignment:
| Q |
14 |
ttacttaaatgatcatgtttaaaatttagttgcctagctatttatttaacttgacagttacaccaaagcactcgttcttgactataacgaaaactattca |
113 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||||||||| |||| | ||||||||||||||||| ||| ||||||||| ||||| |||||| |
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|
| T |
38384165 |
ttacttaaacaatcatgtttaaaatttaggtgcttagctatttac----cttgtcggttacaccaaagcactccttcatgactataatgaaaattattca |
38384070 |
T |
|
| Q |
114 |
cggtcatcgataatataaaatcaaccacaacataaagcaaatagtcatt |
162 |
Q |
| |
|
|||| || |||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
38384069 |
tcctcatagacaatataaaatgaaccagaacataaagcaaatagtcatt |
38384021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 38401617 - 38401459
Alignment:
| Q |
1 |
ccttgccaact-atttacttaaatgatcatgtttaaaatttagttgcctagctatttatttaacttgacagttacaccaaagcactcgttcttgactata |
99 |
Q |
| |
|
||||||||||| | || |||||| | ||||||||||||||||||| | || ||||||| |||| |||||||||| |||||| | ||| |||||||| |
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|
| T |
38401617 |
ccttgccaacttaattgcttaaacggtcatgtttaaaatttagtttcttaactatttac----cttgtcagttacaccgaagcacaccttcatgactata |
38401522 |
T |
|
| Q |
100 |
acgaaaactattcacggtcatcgataatataaaatcaaccacaacataaagcaaatagtcatt |
162 |
Q |
| |
|
| ||||| |||||| |||| || |||||||| |||||||||||||||||||||||| |||| |
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|
| T |
38401521 |
atgaaaattattcatcctcatagacaatataaattcaaccacaacataaagcaaatagccatt |
38401459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 38393018 - 38392881
Alignment:
| Q |
1 |
ccttgccaactat-ttacttaaatgatcatgtttaaaatttagttgcctagctatttatttaacttgacagttacaccaaagcactcgttcttgactata |
99 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||| |||||| |||| |||||| |||| | |||||||| |||||||| ||| |||||| | |
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|
| T |
38393018 |
ccttgccaactttattacttatatgatcatgtttaaaattaagttgcttagc----tatttaccttgtcggttacaccgaagcactccttcatgactaaa |
38392923 |
T |
|
| Q |
100 |
acgaaaactattcacggtcatcgataatataaaatcaaccac |
141 |
Q |
| |
|
| ||||| |||||| | |||| || |||||||| |||||||| |
|
|
| T |
38392922 |
atgaaaattattcatgctcatagacaatataaattcaaccac |
38392881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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