View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20076_low_3 (Length: 549)
Name: NF20076_low_3
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Original strand, 41232070 - 41232528
Alignment:
| Q |
18 |
aaactaactcctacctaatattgtgttagcattggaatcatgtggctataa-----ataggaagaaaagcattttattcatcttgcacacagaaagaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| |||| |
|
|
| T |
41232070 |
aaactaactcctacctaatattgtgttagcattggaatcatgtggctatactatatataggaagcaaagcattttattcatcttccacacagaaaaaaca |
41232169 |
T |
|
| Q |
113 |
taagttgtcaataattaatatccttagtannnnnnnctcctcgctctcgtacacattgacatcctgcatgttgctggtggccattgtatttgtctctgga |
212 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41232170 |
taagttgtccataattaatgtccttagtatttttttctccttgctctcgtacacattgacatcctgcatgttgctggtggccattgtatttgtctctgga |
41232269 |
T |
|
| Q |
213 |
ttttgaacattttagtggccacttatatttctcctaaagaacatataattgtctctaaatgtttttgttcaaatgttacaatggccactgcaacatggag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41232270 |
ttttgaacattttagtggccacttatatttctcctaaagaacatataattgtctctaaatgtttttgttcaaatgttacaatggccattgcaacatggag |
41232369 |
T |
|
| Q |
313 |
gatggaaatgtgcatgatcaccacgttattttattgtt--cagtctttggccatcaagcaacaatggtcactccctacaactgcgatattaattttcaaa |
410 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41232370 |
gatggagatgtgcatgatcaccacgttattttattgttcacaggctttggccatcaagcaacaatggtcactccctacaactgcgatattaattttcaaa |
41232469 |
T |
|
| Q |
411 |
aatgagtggtaagtctatgttggcaatgtaaaatacttcatttctttatatatagagag |
469 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||| ||||| |||| ||||||||| |
|
|
| T |
41232470 |
aatgagtggtaagtctattttggcaatgtacaatacttaatttcattatgtatagagag |
41232528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 41212079 - 41212127
Alignment:
| Q |
18 |
aaactaactcctacctaatattgtgttagcattggaatcatgtggctat |
66 |
Q |
| |
|
|||||| || |||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
41212079 |
aaactaccttctacctaacaatgtgttagcattggaatcatgtggctat |
41212127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 41531385 - 41531456
Alignment:
| Q |
156 |
ctctcgtacacatt-gacatcctgcatgttgctggtggccattgtatttgtctctggattttgaacatttta |
226 |
Q |
| |
|
||||||| |||||| |||||| | ||||||| ||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
41531385 |
ctctcgttcacatttgacatcttacatgttgttggtgaccattgtatttgtcgctaaattttgaacatttta |
41531456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University