View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20076_low_34 (Length: 350)
Name: NF20076_low_34
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_34 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr3 (23 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 26355058 - 26354718
Alignment:
| Q |
10 |
aagaatatcattatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctaga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26355058 |
aagaatatcattatggatggatgttttcatggataaaggtagtgaagttgaacatgaagcattcattgttgcttggttatcaatttttgtttttcctaga |
26354959 |
T |
|
| Q |
110 |
aaatgcatgttggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354958 |
aaatgcatgttggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatata |
26354859 |
T |
|
| Q |
210 |
aggatttaagcgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgtttta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354858 |
aggatttaagcgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgtttta |
26354759 |
T |
|
| Q |
310 |
cttggttcaaatttgggtgtgggagaggttcaaaaacttac |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26354758 |
cttggttcaaatttgggtgtgggagaggttcaaaaaattac |
26354718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 9815036 - 9815361
Alignment:
| Q |
22 |
atggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttg |
121 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||| |||| || ||||| ||||||| | | ||||| ||||| |||||||| || |||| ||| |
|
|
| T |
9815036 |
atggatggattttttcatcgacaaaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtcaatctttgttttaactcataaatct---ttg |
9815132 |
T |
|
| Q |
122 |
gtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcg |
221 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||| |
|
|
| T |
9815133 |
gtgaaaagttctttgttttctattgctattcatcttgctagaggaaattctattgctttggcaccagctgttttagctagtatttataacgatttaagtt |
9815232 |
T |
|
| Q |
222 |
tgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaat |
321 |
Q |
| |
|
||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9815233 |
tgtttaagaaaacaatagttaatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcacccttttacttggttcaaat |
9815332 |
T |
|
| Q |
322 |
ttgggtgtgggagaggttcaaaaacttac |
350 |
Q |
| |
|
||||||||||||||||||| |||| |||| |
|
|
| T |
9815333 |
ttgggtgtgggagaggttccaaaatttac |
9815361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 26646999 - 26647328
Alignment:
| Q |
18 |
cattatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcat |
117 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||| || | ||||||| ||| ||| |||||||||| | | || |
|
|
| T |
26646999 |
cattatggatcgatagtttcatggataaaggtagtgaaattgaacatgaagcattcctttctacttggttgtcagtttatgtttttcctc--atctaaat |
26647096 |
T |
|
| Q |
118 |
gttggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggattta |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26647097 |
-ttggtgaaaagttgtttgtttcctattgctgttcatcttgctagagggaatccaattgctttggcaccggctgttttagctagcttatataaggattta |
26647195 |
T |
|
| Q |
218 |
agcgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttc |
317 |
Q |
| |
|
|| ||||||||||||| ||||||||||| |||| | |||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
26647196 |
agtttgtttaagaaaacacttgttgatttgaaaaaaatttctgatggtggtgatagatatcctttggaagttactcttcaatcacccttttacttggttc |
26647295 |
T |
|
| Q |
318 |
aaatttgggtgtgggagaggttcaaaaacttac |
350 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| |
|
|
| T |
26647296 |
aaatttgggtgtgggaaaggttcaaaaatttac |
26647328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 20036721 - 20036394
Alignment:
| Q |
23 |
tggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcct-agaaaatgcatgttg |
121 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| | ||||||| ||| |||||||||||||| | |||| || ||| |
|
|
| T |
20036721 |
tggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactat-ttg |
20036623 |
T |
|
| Q |
122 |
gtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcg |
221 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
20036622 |
gtgaaaagttctttgtttcctattgctgtatatcttgctagaggaaatcgtattgctttagcacctgctgttttagctagtctatataaggatttaactt |
20036523 |
T |
|
| Q |
222 |
tgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaat |
321 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
20036522 |
tgtttaagaaaacaattgttgatttgtcaaaatgtcatgttggtggtgatagacttcctttagaagttactcttgaatcacccttttacttggttcaaat |
20036423 |
T |
|
| Q |
322 |
ttgggtgtgggagaggttcaaaaacttac |
350 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
20036422 |
ttgggtgtgggagaggttcaaaaatttac |
20036394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 19956072 - 19956411
Alignment:
| Q |
11 |
agaatatcattatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaa |
110 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| ||||||||||||||| ||||||| ||||| || ||| | ||||||| |||||||||||||| ||| | |
|
|
| T |
19956072 |
agaacatcactatggatggatattttcattgataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctcata |
19956171 |
T |
|
| Q |
111 |
aatgcatgttggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataa |
210 |
Q |
| |
|
||| | |||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19956172 |
aatattcttccgtgaaaagttatttgtttcctattgttgttcatcttgctagaggaaatcctattgctttggcaccagctgttttagctagcatatataa |
19956271 |
T |
|
| Q |
211 |
ggatttaagcgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttac |
310 |
Q |
| |
|
|||||||| |||| ||||||| | |||||||||||||||| |||| ||||||||||||||||||| |||| |||||||||||||||| |||||| |
|
|
| T |
19956272 |
ggatttaactttgttaaagaaaaaaacagttgatttgtcaaaatatcctgtgggtggtgatagatatccttcagaacttactcttcaatcacccttttac |
19956371 |
T |
|
| Q |
311 |
ttggttcaaatttgggtgtgggagaggttcaaaaacttac |
350 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
19956372 |
ttggttcaaatttgggtgtgggaaaggttcaaaaatttac |
19956411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 19951119 - 19951448
Alignment:
| Q |
18 |
cattatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcat |
117 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| ||||||| ||||| ||| ||||| ||||||| ||| ||||||||||||||| | ||| || |
|
|
| T |
19951119 |
cattatggatggatattttcactgataaaggtagtgaaattgaacatgaagccttccttgttacttggttgtcactttttgtttttccta-ataataaat |
19951217 |
T |
|
| Q |
118 |
gttggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggattta |
217 |
Q |
| |
|
|||||| |||| || | | |||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
19951218 |
--tggtgaggagttattcgctacctattgctattcatcttgctagaggaaatcctattgctttggctccagctgttttagctagcatatataaggattta |
19951315 |
T |
|
| Q |
218 |
agcgtgtttaagaaaaccattgttgatttgtcaaaattatc-tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggtt |
316 |
Q |
| |
|
| ||||||| ||| | |||||||||||||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
19951316 |
actttgtttaaaaaagcaattgttgatttgtcaaaa-tatcatgtgggtggtgatagatatcctttagaacttactcttcaatcacccttttacttggtt |
19951414 |
T |
|
| Q |
317 |
caaatttgggtgtgggagaggttcaaaaacttac |
350 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||| |
|
|
| T |
19951415 |
caaatttggatttgggagaggtttaaaaatttac |
19951448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 19838381 - 19838720
Alignment:
| Q |
11 |
agaatatcattatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaa |
110 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| ||||||||||| ||| ||||||| ||||| || | | | ||||||| ||||||||||||||||||| |
|
|
| T |
19838381 |
agaacatcactatggatggatattttcatcgataaaggtagcgaaattgaacatgaagcttttctagctacttggttgtcaatttttgtttttcctaatc |
19838480 |
T |
|
| Q |
111 |
aatgcatgttg-gtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatata |
209 |
Q |
| |
|
|| | | ||| |||||||| | ||||||||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19838481 |
aacac-tcttgcgtgaaaagctttttgtttccaattgttgttcatcttgctagaggaaattctattgctttggcaccagctgttttagctagcatatata |
19838579 |
T |
|
| Q |
210 |
aggatttaagcgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgtttta |
309 |
Q |
| |
|
| ||||||| |||| ||||||| | ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19838580 |
atgatttaactttgttaaagaaaaaaacagttgatttgtcaaaacatcctgttggttgtgatacatatcctttagaagttactcttcaatcaccctttta |
19838679 |
T |
|
| Q |
310 |
cttggttcaaatttgggtgtgggagaggttcaaaaacttac |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19838680 |
cttggttcaaatttgggtgtgggagaggttcaaaaatttac |
19838720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 41 - 344
Target Start/End: Complemental strand, 20016301 - 20015998
Alignment:
| Q |
41 |
gataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttc |
140 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| | ||||| | |||||||||||||| ||| |||| | | |||||||||| |||||||| |
|
|
| T |
20016301 |
gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttc |
20016202 |
T |
|
| Q |
141 |
ctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaaccattgt |
240 |
Q |
| |
|
| ||||||||||||||||||||| ||||| |||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
20016201 |
cgattgctattcatcttgctagacgaaatcctattgctttggcaccagctgtcttggctagcatatataaagatttaagtttgtttaagaaaacaattgt |
20016102 |
T |
|
| Q |
241 |
tgatttgtcaaaattatc-tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggtt |
339 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
20016101 |
tgatttgtcaaaa-tatcatgtgggtggtgataggtatcctttagaagttacacttcaatcacccatttatttggttcaaatttgggtgtgggagaggtt |
20016003 |
T |
|
| Q |
340 |
caaaa |
344 |
Q |
| |
|
||||| |
|
|
| T |
20016002 |
caaaa |
20015998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 26 - 341
Target Start/End: Original strand, 26653155 - 26653467
Alignment:
| Q |
26 |
atggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtga |
125 |
Q |
| |
|
|||||| ||||||| || ||||||||||| ||||||| || |||||| ||| |||||||| |||||||||||||||||| | | | || | |||| |
|
|
| T |
26653155 |
atggatattttcattgactaaggtagtgaaattgaacatgatgcattccttgcagcttggttgtcaatttttgtttttcctcatata-gaat--tagtga |
26653251 |
T |
|
| Q |
126 |
aaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtt |
225 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| || | |||| |
|
|
| T |
26653252 |
aaagttctttgttttctattgctgttcatcttgctagaggaaatcctattgctttggcaccagctgttttagctagtatatataaggacttgactttgtt |
26653351 |
T |
|
| Q |
226 |
taagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgg |
325 |
Q |
| |
|
||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||| ||||||| ||| | |||||| ||||||||||||||||||||| |
|
|
| T |
26653352 |
taagaaaacaattgttggtttgtcaaaatattatgttggtggtgatagatttcctttggaagttaatctacgatcacccttttacttggttcaaatttgg |
26653451 |
T |
|
| Q |
326 |
gtgtgggagaggttca |
341 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26653452 |
gtgtgggagaggttca |
26653467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 43 - 345
Target Start/End: Original strand, 19812300 - 19812599
Alignment:
| Q |
43 |
taaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcct |
142 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||| | ||||||| |||||||||||||||||| |||| || |||||||||| ||||||||||| |
|
|
| T |
19812300 |
taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaat--at-ttggtgaaaaagtctttgtttccg |
19812396 |
T |
|
| Q |
143 |
attgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaaccattgttg |
242 |
Q |
| |
|
|| ||||||| |||||||||||| || |||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
19812397 |
atcgctattcttcttgctagagggtatcctattgctttggcaccagctgtcttggctagcatatataaagatttaagtttgtttaagaaaacaattgttg |
19812496 |
T |
|
| Q |
243 |
atttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaa |
342 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| || || |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19812497 |
atttgtcaaaatatcctgttggtggtgatagatttcccttggagattactcttcaatcacccttttacttggttcaaatttgggtttgggagaggttcaa |
19812596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 23 - 345
Target Start/End: Original strand, 19848990 - 19849312
Alignment:
| Q |
23 |
tggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcct-agaaaatgcatgttg |
121 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| | ||||||| ||| |||||||||||||| | |||| || ||| |
|
|
| T |
19848990 |
tggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactat-ttg |
19849088 |
T |
|
| Q |
122 |
gtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcg |
221 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
19849089 |
gtgaaaagttctttgtttcctattgctgtatatcttgctagaggaaatcgtattgctttagcacctgctgttttagctagtctatataaggatttaactt |
19849188 |
T |
|
| Q |
222 |
tgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaat |
321 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||||||||||||||| ||| || || |||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
19849189 |
tgtttaagaaaacaatcactgatttgtcaaaatgtcatgttggtggtgatagatttcccttggagattactcttaaatcacccttttatttggttcaaat |
19849288 |
T |
|
| Q |
322 |
ttgggtgtgggagaggttcaaaaa |
345 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
19849289 |
ttgggtgtgggagaggttcaaaaa |
19849312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 345
Target Start/End: Original strand, 19818556 - 19818876
Alignment:
| Q |
22 |
atggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttg |
121 |
Q |
| |
|
||||||||| |||| || | |||||||| ||| ||||||| ||||| || ||| | |||||||||||||||||||||||||| || | || ||| |
|
|
| T |
19818556 |
atggatggaaatttttattggtaaaggtaccgaaattgaacatgaagcttttcttgctacttggttatcaatttttgtttttcctcataa--gaat-ttg |
19818652 |
T |
|
| Q |
122 |
gtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcg |
221 |
Q |
| |
|
||||||| || | |||||||| ||||| || ||||||||||||| ||| ||||||||||||||||||||||||| |||| ||| ||||| |||||||| |
|
|
| T |
19818653 |
gtgaaaaattatctgtttcctgttgctgttaatcttgctagagggaatcctattgctttggcaccggctgttttggctaacatttataaagatttaagtt |
19818752 |
T |
|
| Q |
222 |
tgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaat |
321 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||| |
|
|
| T |
19818753 |
tgtttaagaaaaaaatagttgatttgtcaaaatattctgttggtggtgatagatttcctttagaacttactcttcaatcacccttttatttggttcaaat |
19818852 |
T |
|
| Q |
322 |
ttgggtgtgggagaggttcaaaaa |
345 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
19818853 |
atgggtgtgggagaggttcaaaaa |
19818876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 20046116 - 20046437
Alignment:
| Q |
16 |
atcattatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcct-agaaaatg |
114 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||| ||||||||||||| ||| || | ||||||| |||||||||||||||||| | |||| |
|
|
| T |
20046116 |
atcattatggatggatatgttcatcgataaaggtagtgaaattgaacacgaagccttccttactacttggttgtcaatttttgtttttcctcataaaa-- |
20046213 |
T |
|
| Q |
115 |
catgttggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggat |
214 |
Q |
| |
|
|| | |||||||| || ||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||| | |||||||||||||||| |
|
|
| T |
20046214 |
-atat-ggtgaaaaattgtttgttttctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgttttgggtagcatatataaggat |
20046311 |
T |
|
| Q |
215 |
ttaagcgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttgg |
314 |
Q |
| |
|
||||| | |||||||| || ||| ||||| ||| ||||| | |||||||||||||||| |||| | ||| ||||| ||| |||||| ||||| |||| |
|
|
| T |
20046312 |
ttaagtttatttaagaacacaattattgatctgttaaaatatccggttggtggtgatagatttcctgttgaatttactattctatcacccttttatttgg |
20046411 |
T |
|
| Q |
315 |
ttcaaatttgggtgtgggagaggttc |
340 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
20046412 |
ttcaagtttgggtgtgggagaggttc |
20046437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 21 - 350
Target Start/End: Original strand, 19989520 - 19989849
Alignment:
| Q |
21 |
tatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcct-agaaaatgcatgt |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| ||||||| |||||||| ||| | ||||||| |||||||||||| |||| | |||| | ||| |
|
|
| T |
19989520 |
tatggatggatgttttcattgataaaggtaatgaacttgaacatgaagcatttcttgctacttggttgtcaatttttgttcatccttataaaagtcgtgt |
19989619 |
T |
|
| Q |
120 |
tggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaag |
219 |
Q |
| |
|
|| |||| |||||||| |||| | |||||||||||||||||||||||||| ||||||| || ||||| || ||||| ||||| | |||||||||||| | |
|
|
| T |
19989620 |
tg-tgaatagttctttctttcgtgttgctattcatcttgctagaggaaatcctattgcattagcacctgcagttttggctagtttgtataaggatttagg |
19989718 |
T |
|
| Q |
220 |
cgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaa |
319 |
Q |
| |
|
| ||||||| | | ||| ||||||||||| | ||||||||||||||||| ||| | || | || |||||||||||| ||||||||||||||| |
|
|
| T |
19989719 |
tttacttaagaacatattagttaatttgtcaaaacttcctgttggtggtgatagacttcccatggaggctattcttcaatcacccttttacttggttcaa |
19989818 |
T |
|
| Q |
320 |
atttgggtgtgggagaggttcaaaaacttac |
350 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |
|
|
| T |
19989819 |
gtttgggtttgggagaggttcaaaaatttac |
19989849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 24840092 - 24839869
Alignment:
| Q |
23 |
tggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttgg |
122 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| || |||||||| ||| | ||||||| |||||||||||||| ||| |||| | | | |
|
|
| T |
24840092 |
tggatggatattttcatcgataaaggtagtgaagttgagcatgaagcatttcttgctacttggttgtcaatttttgttttccctcataaatactctctag |
24839993 |
T |
|
| Q |
123 |
tgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgt |
222 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||| |||||||| ||| ||||| |||||||||| |||||||| |||||| ||||||| |||||||| | |
|
|
| T |
24839992 |
tgaaatgttctttgtttcctgttgctgttcatctagctagagggaatcctatttctttggcacctgctgttttggctagcttatataacgatttaaggtt |
24839893 |
T |
|
| Q |
223 |
gtttaagaaaaccattgttgattt |
246 |
Q |
| |
|
||||||||| || ||||||||||| |
|
|
| T |
24839892 |
gtttaagaacacaattgttgattt |
24839869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 19858072 - 19858281
Alignment:
| Q |
23 |
tggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttgg |
122 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |||| || |||||||| ||| | ||||||| ||||||||||||||||||| | || | | | |
|
|
| T |
19858072 |
tggatggatattttcatcgataaaggtagtgaaattgagcatgaagcatttcttgctacttggttgtcaatttttgtttttcctaatagatactttaatg |
19858171 |
T |
|
| Q |
123 |
tgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgt |
222 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||||| |||||| ||||||| ||||| || | |
|
|
| T |
19858172 |
tgaaaagatctttgtttcctattgctattggtcttgctagaggaaatactatcgctttggcacctgctgttttggctagcttatataacgatttgagttt |
19858271 |
T |
|
| Q |
223 |
gtttaagaaa |
232 |
Q |
| |
|
|||||||||| |
|
|
| T |
19858272 |
gtttaagaaa |
19858281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 43 - 246
Target Start/End: Original strand, 19853532 - 19853735
Alignment:
| Q |
43 |
taaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcct |
142 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||| | ||||||| || ||||||||||||||| | || | | | |||||||| |||||||||||| |
|
|
| T |
19853532 |
taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctcatagatactttattgtgaaaagatctttgtttcct |
19853631 |
T |
|
| Q |
143 |
attgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaaccattgttg |
242 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||||||||||| |||||||| |||||| ||||||| ||||| || |||||||||||| ||||||| |
|
|
| T |
19853632 |
attgctattcgtcttgctagaggtaatactattgctttggcacctgctgttttggctagcttatataacgatttgagtttgtttaagaaaaaaattgttg |
19853731 |
T |
|
| Q |
243 |
attt |
246 |
Q |
| |
|
|||| |
|
|
| T |
19853732 |
attt |
19853735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 19943720 - 19943940
Alignment:
| Q |
23 |
tggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttgg |
122 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| | ||||||| ||||||| ||||||||| | || || ||| |
|
|
| T |
19943720 |
tggatggatattttcatcgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaattt--gtttttcctcatagatacaatgtgg |
19943817 |
T |
|
| Q |
123 |
tgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgt |
222 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||| | | |||| ||||||||||| |||||||| |||||| ||||||||||||| || | |
|
|
| T |
19943818 |
tgaaaagttct--gtttcctattgctgttcatcttgctagagggattcctatggctttggcacctgctgttttggctagcttatataaggatttgagttt |
19943915 |
T |
|
| Q |
223 |
gtttaagaaaaccattgttgatttg |
247 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
19943916 |
gtttaagaaacaaattgttgatttg |
19943940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 33 - 345
Target Start/End: Original strand, 30914653 - 30914965
Alignment:
| Q |
33 |
ttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttc |
132 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||| ||||||||| || | ||||||| |||||||||||||| ||| ||| || ||||||||||||| |
|
|
| T |
30914653 |
ttttcattgataaagttagtgaaattgaacatgaagcattccttactacttggttgtcaatttttgttttccctcacaaag--at-ttggtgaaaagttt |
30914749 |
T |
|
| Q |
133 |
tttgtttcctattgc---tattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaag |
229 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || | |||| || ||||| || ||||||||||| || |||||||| |||||||| |
|
|
| T |
30914750 |
tttgtttcctattgcgcctattcatcttgctagagggaacattgttgcattagcaccaaaaaaattggctagcatatacaaagatttaagtttgtttaag |
30914849 |
T |
|
| Q |
230 |
aaaaccattgttgatttgtcaaaattatct-gttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtg |
328 |
Q |
| |
|
||||| || |||| ||||||||||| ||| |||||||||||||||| |||| | || ||||||||||| ||||| ||| ||||||| ||||||||||| |
|
|
| T |
30914850 |
aaaacaatagttggtttgtcaaaat-atcaagttggtggtgatagatgtcctatggaggttactcttcactcaccctttgacttggtacaaatttgggtt |
30914948 |
T |
|
| Q |
329 |
tgggagaggttcaaaaa |
345 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
30914949 |
tgggagaggttaaaaaa |
30914965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 19832123 - 19832196
Alignment:
| Q |
277 |
tcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaacttac |
350 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19832123 |
tcctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaaatttac |
19832196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 19971710 - 19971835
Alignment:
| Q |
122 |
gtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | |||||| ||| |||||||||||||||| ||||||| |||||| |||||||||||| || |
|
|
| T |
19971710 |
gtgaaaagttctttgtttcctattgctattcatttggttagaggcaatactattgctttggcaccaactgttttggctagcttatataaggattgaactc |
19971809 |
T |
|
| Q |
222 |
tgtttaagaaaaccattgttgatttg |
247 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
19971810 |
tgtttaagaaacaaattgttgatttg |
19971835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 350
Target Start/End: Original strand, 17114912 - 17115040
Alignment:
| Q |
222 |
tgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaat |
321 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||| ||||||||||| ||||||||||||| ||| || | || ||||||||||||||||| |
|
|
| T |
17114912 |
tgtttaagaaaactattattgatttgtcaaaaaatcctgtttatggtgatagatttcctttagaagttgctcgtcgaatgcccttttacttggttcaaat |
17115011 |
T |
|
| Q |
322 |
ttgggtgtgggagaggttcaaaaacttac |
350 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |
|
|
| T |
17115012 |
ttggatgtgggagaggttcaaaaatttac |
17115040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 19943987 - 19944036
Alignment:
| Q |
296 |
caatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaa |
345 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
19943987 |
caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaaa |
19944036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 24839822 - 24839773
Alignment:
| Q |
296 |
caatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaa |
345 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
24839822 |
caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaaa |
24839773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 19858343 - 19858391
Alignment:
| Q |
297 |
aatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaa |
345 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||| ||||| ||||||||||| |
|
|
| T |
19858343 |
aatcacccttttacttgcttcaagtttgggtttgggaaaggttcaaaaa |
19858391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 1717209 - 1717532
Alignment:
| Q |
18 |
cattatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcat |
117 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| ||||||| |||||||| ||| | ||||||| || ||| |||||||||| ||| || | |
|
|
| T |
1717209 |
cattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa-gctt |
1717307 |
T |
|
| Q |
118 |
gttggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggattta |
217 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1717308 |
--tggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggattta |
1717405 |
T |
|
| Q |
218 |
agcgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttc |
317 |
Q |
| |
|
| ||||||||||||| || |||| ||||||||||| |||||||||| ||||||| | || || |||| |||||||||||| ||||||||||||| |
|
|
| T |
1717406 |
actttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttc |
1717505 |
T |
|
| Q |
318 |
aaatttgggtgtgggagaggttcaaaa |
344 |
Q |
| |
|
|||||||||||| || |||||||||| |
|
|
| T |
1717506 |
aaatttgggtgttgggaaggttcaaaa |
1717532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 22689773 - 22689550
Alignment:
| Q |
23 |
tggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttgg |
122 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||| ||||||| |||||||| ||| | ||||||| |||||||||||||||||| ||| |||| || |
|
|
| T |
22689773 |
tggatggatgttttcatcgataatggtaatgaatttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaaaatatgtcgg |
22689674 |
T |
|
| Q |
123 |
tgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgt |
222 |
Q |
| |
|
| ||||||||||||||| ||||| |||||||||| |||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||| || | |
|
|
| T |
22689673 |
tcaaaagttctttgtttactatttctattcatctggctagaggcaatactattgctttggcacctgctgttttggctagcatatataaggatttgagttt |
22689574 |
T |
|
| Q |
223 |
gtttaagaaaaccattgttgattt |
246 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
22689573 |
gtttaagaaacaaattgttgattt |
22689550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 122 - 253
Target Start/End: Complemental strand, 22651912 - 22651781
Alignment:
| Q |
122 |
gtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcg |
221 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| ||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
22651912 |
gtgaaaagttgtttgtttcctattgctgttcatcttgctagaggaaatcctattgcttttgcaccagctgttttggctagcatgtataaggatttaactt |
22651813 |
T |
|
| Q |
222 |
tgtttaagaaaaccattgttgatttgtcaaaa |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
22651812 |
tgtttaagaaaacaattgttgatttgtcaaaa |
22651781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 11564254 - 11564059
Alignment:
| Q |
21 |
tatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgtt |
120 |
Q |
| |
|
|||||||||| |||||||| ||||| |||| || ||||||| |||||||||||| ||| ||| | || ||||||||||||||| ||| || |||| |
|
|
| T |
11564254 |
tatggatggaatttttcatgagtaaagctagtaaaattgaacatgaagcattcatttctgcatggctttccatttttgtttttcctcataaaagcttgtt |
11564155 |
T |
|
| Q |
121 |
ggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggattt |
216 |
Q |
| |
|
| | |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| | ||| | ||| || ||||||||||||| |
|
|
| T |
11564154 |
gatcaaaagttctttgtttcctattgctgttcatcttgctagaggaaaacctattgctttagcaccgtcggttctggcttgcttatataaggattt |
11564059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 22685778 - 22685642
Alignment:
| Q |
43 |
taaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcct |
142 |
Q |
| |
|
||||||||||||| |||| || |||||||| ||| ||||||||| ||| |||||||||||||| ||| || |||||||||| |||| ||||||| |
|
|
| T |
22685778 |
taaaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtcactttttgtttttcctcataaa---attttggtgaaaacttctatgtttccg |
22685682 |
T |
|
| Q |
143 |
attgctattcatcttgctagaggaaattctattgctttgg |
182 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
22685681 |
attgctattcatcttgctagagggaatcctattgctttgg |
22685642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 22652211 - 22652126
Alignment:
| Q |
18 |
cattatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgttttt |
103 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||||| ||||| ||| ||| | ||||||| ||||||||||||||| |
|
|
| T |
22652211 |
cattatggatggatattttcatcgataaaggtagtgaaattgaacatgaagcgttccttgctacttggttgtcaatttttgttttt |
22652126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 22689530 - 22689472
Alignment:
| Q |
287 |
gttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaa |
345 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22689530 |
gttaatctgcaatcacccttttacttggttcaagtttgggtgtgggagaggttcaaaaa |
22689472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 11544343 - 11544392
Alignment:
| Q |
296 |
caatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaa |
345 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
11544343 |
caatcacccatttacttggttcaagtttgggtttgggagaggttcaaaaa |
11544392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 22685641 - 22685596
Alignment:
| Q |
208 |
taaggatttaagcgtgtttaagaaaaccattgttgatttgtcaaaa |
253 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
22685641 |
taaggatttaagtttttttaagaaaacaattgttgatttgtcaaaa |
22685596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 6398258 - 6398586
Alignment:
| Q |
20 |
ttatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgt |
119 |
Q |
| |
|
|||||||||||| | || || |||||||||||||| ||||||| ||||| ||| ||| | |||||| | |||||||||||||||||| ||| ||| |
|
|
| T |
6398258 |
ttatggatggatatgtttatctataaaggtagtgaaattgaacatgaagccttccttgctaattggttgttaatttttgtttttcctagtaaaacaatg- |
6398356 |
T |
|
| Q |
120 |
tggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagc--atatataaggattta |
217 |
Q |
| |
|
|||||||||| ||||||| |||||||| || |||| |||||||||||| | || | ||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
6398357 |
--gtgaaaagttgtttgttttctattgctgttaatctcgctagaggaaatccaatcggtttggcaccagctgttttagctagcatatatataaggattta |
6398454 |
T |
|
| Q |
218 |
agcgtgtttaag-aaaaccattgttgatttgtcaaaattatc-tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggt |
315 |
Q |
| |
|
| | |||||| |||| ||| ||||| |||||||| |||| ||||| || |||||||| |||| | ||| ||||||| ||||| |||||| |||| |
|
|
| T |
6398455 |
actttatttaagaaaaaaaattattgatatgtcaaaa-tatcatgttgatgatgatagatttcctgttgaatttactctgttgtcacctttttacgtggt |
6398553 |
T |
|
| Q |
316 |
tcaaatttgggtgtgggagaggttcaaaaactt |
348 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||||| |
|
|
| T |
6398554 |
tcaagtttaggtgtgggagaggttcacaaactt |
6398586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 6397865 - 6397539
Alignment:
| Q |
14 |
atatcattatggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaat |
113 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||||| ||||||| ||||| ||| ||| | | ||||| ||||||| || ||||||| ||| |
|
|
| T |
6397865 |
atatcattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagccttccttgctacctggttgtcaatttgtgcttttcctcctaaaa |
6397766 |
T |
|
| Q |
114 |
gcatgttggtgaaaagttct--ttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataag |
211 |
Q |
| |
|
||| |||||||||| | ||| || ||||| | || |||||||||||| |||| | |||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
6397765 |
aaatg---gtgaaaagttttgtttgctttctattaatgttaatcttgctagagaaaatccaattgctttggcaccatctgttttggctatcatatataag |
6397669 |
T |
|
| Q |
212 |
gatttaagcgtgtttaagaaaaccattgttgatttgtcaaaattatc-tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttac |
310 |
Q |
| |
|
|||||| | ||||||||||| ||| |||||||||| ||| |||| |||||||| ||||| || || | | ||| ||||||||| |||||| |||||| |
|
|
| T |
6397668 |
gatttatctttatttaagaaaacaattattgatttgtcgaaa-tatcttgttggtgatgataaatttcatgttgaatttactcttctatcacctttttac |
6397570 |
T |
|
| Q |
311 |
ttggttcaaatttgggtgtgggagaggttca |
341 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| |
|
|
| T |
6397569 |
ttggttcaagtttgggcgtggaagaggttca |
6397539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 254
Target Start/End: Original strand, 12581426 - 12581620
Alignment:
| Q |
57 |
ttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcctattgctattcatct |
156 |
Q |
| |
|
||||||| ||||| ||| ||| | ||||||| |||||||||||||||||| | | | ||| |||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
12581426 |
ttgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctcgtagaaaaatg---gtgaaaagttatttgttttctattgctattaatct |
12581522 |
T |
|
| Q |
157 |
tgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaaccattgttgatttgtcaaaat |
254 |
Q |
| |
|
||||||| ||||| ||| ||||| | | ||||||| ||||||||| |||||||||||| | ||||||||||| ||| ||||| ||||||||| |
|
|
| T |
12581523 |
tgctagaagaaatcgaattactttgccgcaaactgttttggctagcataaataaggatttaactttatttaagaaaacaattattgatctgtcaaaat |
12581620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 253
Target Start/End: Original strand, 12497303 - 12497436
Alignment:
| Q |
120 |
tggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaag |
219 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||| ||||||||||| ||||| ||| ||||| | || |||||||| ||||||||| |||| ||||||| |
|
|
| T |
12497303 |
tggtgataagttatttgttttctattgctattaatcttgctagaagaaatcaaattactttgccgccagctgttttggctagcataaataacgatttaac |
12497402 |
T |
|
| Q |
220 |
cgtgtttaagaaaaccattgttgatttgtcaaaa |
253 |
Q |
| |
|
| ||||||||||| ||| ||||| |||||||| |
|
|
| T |
12497403 |
tttatttaagaaaacaattattgatctgtcaaaa |
12497436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 253
Target Start/End: Original strand, 12521168 - 12521301
Alignment:
| Q |
120 |
tggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaag |
219 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||| ||||||||||| ||||| ||| ||||| | || |||||||| ||||||||| |||| ||||||| |
|
|
| T |
12521168 |
tggtgataagttatttgttttctattgctattaatcttgctagaagaaatcaaattactttgccgccagctgttttggctagcataaataacgatttaac |
12521267 |
T |
|
| Q |
220 |
cgtgtttaagaaaaccattgttgatttgtcaaaa |
253 |
Q |
| |
|
| ||||||||||| ||| ||||| |||||||| |
|
|
| T |
12521268 |
tttatttaagaaaacaattattgatctgtcaaaa |
12521301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 12579972 - 12579884
Alignment:
| Q |
259 |
tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaact |
347 |
Q |
| |
|
|||||||| ||||| ||||||| | || ||||||||| |||||| |||||||||| | || ||||| | |||||||||||| ||||| |
|
|
| T |
12579972 |
tgttggtgatgatatatatcctgtttaatttactcttccatcacctttttacttggcttaagtttggatacgggagaggttcacaaact |
12579884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University