View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_35 (Length: 348)
Name: NF20076_low_35
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 2709312 - 2708995
Alignment:
| Q |
16 |
atgattgtgatgtttatggtatttgtggtcctaatggaagctgtgatttgaaaagttctccaatatgtacttgtttgataggttttaagccaagaaacgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2709312 |
atgattgtgatgtttatggtatttgtggtcctaatggaagctgtgatttgaaaaattctccaatatgtacttgtttgataggttttaagccaagaaacgt |
2709213 |
T |
|
| Q |
116 |
cggcgaatggaatagagaaaattggactggtgggtgtgtgagaagggctacactacaatgtgagagggggaagtacaatgggagtgcattagacggtgaa |
215 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2709212 |
gggcgaatggaatagagaaaattggactagtgggtgtgtgagaagggctacactacaatgtgagagggggaagtacaatgggagtgcattagacggtgaa |
2709113 |
T |
|
| Q |
216 |
gaagacgggtttctaaaactagagacgacaaaaccaccagattttgtagaacaatcatatccttctcttgatgcttgtcgaattaagtgcttgaataatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2709112 |
gaagacgggtttctaaaactagagacgacaaaaccaccagattttgtagaacaatcatatccttctcttgatgcttgtcgaattgagtgcttgaataatt |
2709013 |
T |
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| Q |
316 |
gttcttgtgttgcttatg |
333 |
Q |
| |
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|||||||||||||||||| |
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| T |
2709012 |
gttcttgtgttgcttatg |
2708995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 2714347 - 2714030
Alignment:
| Q |
16 |
atgattgtgatgtttatggtatttgtggtcctaatggaagctgtgatttgaaaagttctccaatatgtacttgtttgataggttttaagccaagaaacgt |
115 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
2714347 |
atgattgtgattcttatggtatttgtggtcctaatggaagctgtgatttgaaaatttctccaatttgtacttgtttgataggttttaagccaagaaatat |
2714248 |
T |
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| Q |
116 |
cggcgaatggaatagagaaaattggactggtgggtgtgtgagaagggctacactacaatgtgagagggggaagtacaatgggagtgcattagacggtgaa |
215 |
Q |
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| | ||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||| |||| |||||||| ||||||||||||| |||||| |
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| T |
2714247 |
ggacaaatggaatagacgaaattggacaagtgggtgtgtgagaagggcagaactacagtgtgacagggtgaagtacagtgggagtgcatta---ggtgaa |
2714151 |
T |
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| Q |
216 |
gaagacgggtttctaaaactagagacgacaaaaccaccagattttgtagaacaatcata---tccttctcttgatgcttgtcgaattaagtgcttgaata |
312 |
Q |
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|||||||| |||||||||||| || |||||||||||| ||||||||||| | |||||| || ||||||||| | ||| ||||| | |||||||||| |
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| T |
2714150 |
gaagacggatttctaaaactaccgatgacaaaaccaccggattttgtagagccatcatatgttctttctcttgacgaatgtagaattcattgcttgaata |
2714051 |
T |
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| Q |
313 |
attgttcttgtgttgcttatg |
333 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2714050 |
attgttcttgtgttgcttatg |
2714030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 2725710 - 2725387
Alignment:
| Q |
10 |
aagaatatgattgtgatgtttatggtatttgtggtcctaatggaagctgtgatttgaaaagttctccaatatgtacttgtttgataggttttaagccaag |
109 |
Q |
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||||| |||| |||||| |||||||| |||||||||||||||||||||||||| ||| | || |||||||| || ||||||| ||||||| |||| | |
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| T |
2725710 |
aagaaaatgaatgtgatatttatggtttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcg |
2725611 |
T |
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| Q |
110 |
aaacgtcggcgaatggaatagagaaaattggactggtgggtgtgtgagaagggctacactacaatgtgagagggggaagtacaatgggagtgcattagac |
209 |
Q |
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||| || | |||||||||||| ||||||||| ||||||||| ||||| ||| |||| || |||||||||| ||| |||||||| |||| ||||| |
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| T |
2725610 |
aaatgtggatgaatggaatagacaaaattggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggt |
2725511 |
T |
|
| Q |
210 |
ggtgaagaagacgggtttctaaaactagagacgacaaaaccaccagattttgtagaacaatcatatccttctcttgatgcttgtcgaattaagtgcttga |
309 |
Q |
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|| ||| ||| || ||| | |||||||||| |||||| ||||||||||||| |||||||||||| || | |||||| ||| ||| | ||||||||| |
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| T |
2725510 |
ggcaaaggagatggttttgtgaaactagagatgacaaagataccagattttgtacaacaatcatatctttttgctgatgcatgtagaactgagtgcttga |
2725411 |
T |
|
| Q |
310 |
ataattgttcttgtgttgcttatg |
333 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
2725410 |
ataattgttcttgtgttgcttatg |
2725387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 2747185 - 2746884
Alignment:
| Q |
16 |
atgattgtgatgtttatggtatttgtggtcctaatggaagctgtgatttgaaaagttctccaatatgtacttgtttgataggttttaagccaagaaacgt |
115 |
Q |
| |
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|||| |||||| |||||||| ||||||||| |||||||| |||||||| || || || |||||||| || ||||||| ||||||| |||| |||| || |
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| T |
2747185 |
atgaatgtgatatttatggtttttgtggtcttaatggaaactgtgattcgacaaactcaccaatatgcacatgtttgacaggttttgagccgcgaaatgt |
2747086 |
T |
|
| Q |
116 |
cggcgaatggaatagagaaaattggactggtgggtgtgtgagaagggctacactacaatgtgagagggggaagtacaatgggagtgcattagacggtgaa |
215 |
Q |
| |
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| |||||||||||| ||||||||| ||||||||||||||||| | |||| || |||||||||| ||| |||||||| |||| ||||| ||| || |
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| T |
2747085 |
ggatgaatggaatagacaaaattggataagtgggtgtgtgagaaggacatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggcggcaaa |
2746986 |
T |
|
| Q |
216 |
gaagacgggtttctaaaactagagacgacaaaaccaccagattttgtagaacaatcatatccttctcttgatgcttgtcgaattaagtgcttgaataatt |
315 |
Q |
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||||| || ||| | || ||||||| ||||||| ||||||||||||| |||||||||||| || | |||||| ||| || | ||||||||||||||| |
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| T |
2746985 |
gaagatggttttgtgaagctagagatgacaaaaataccagattttgtacaacaatcatatctttttgttgatgaatgtaaaactcagtgcttgaataatt |
2746886 |
T |
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| Q |
316 |
gt |
317 |
Q |
| |
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|| |
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| T |
2746885 |
gt |
2746884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 317
Target Start/End: Complemental strand, 2720299 - 2720010
Alignment:
| Q |
28 |
tttatggtatttgtggtcctaatggaagctgtgatttgaaaagttctccaatatgtacttgtttgataggttttaagccaagaaacgtcggcgaatggaa |
127 |
Q |
| |
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|||||||| |||||||||||||||||| || |||||||||| || |||||||| || ||||| ||||||| |||||| ||| || | ||||||||| |
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| T |
2720299 |
tttatggttattgtggtcctaatggaagttgcgatttgaaaaatttgccaatatgcacatgtttagaaggttttgagccaaaaaatgtagacgaatggaa |
2720200 |
T |
|
| Q |
128 |
tagagaaaattggactggtgggtgtgtgagaagggctacactacaatgtgagagggggaagtacaatgggagtgcattagacggtgaagaagacgggttt |
227 |
Q |
| |
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|| | | ||||||| | ||||||||||||||||||| | |||||||||||||||| ||| || ||||||||||| |||| || ||| ||| | ||| |
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| T |
2720199 |
taaacagaattggagtagtgggtgtgtgagaagggcatccctacaatgtgagagggtgaaatataatgggagtgcgttaggtggcaaaggagatgatttt |
2720100 |
T |
|
| Q |
228 |
ctaaaactagagacgacaaaaccaccagattttgtagaacaatcatatccttctcttgatgcttgtcgaattaagtgcttgaataattgt |
317 |
Q |
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| ||||| |||||||||||| |||||||||||| |||| ||||||| |||| || |||| ||| || | ||||||||||||||||| |
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| T |
2720099 |
gtgaaactcgagacgacaaaagtaccagattttgtgcaacagtcatatctttctgttaatgcatgtagagctgagtgcttgaataattgt |
2720010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 2733936 - 2733884
Alignment:
| Q |
13 |
aatatgattgtgatgtttatggtatttgtggtcctaatggaagctgtgatttg |
65 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||| |
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|
| T |
2733936 |
aatataattgtgatgtttatggtttttgtggtcctaatgaaagctatgatttg |
2733884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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