View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20076_low_36 (Length: 348)
Name: NF20076_low_36
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_36 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 35204279 - 35203947
Alignment:
| Q |
1 |
tgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204279 |
tgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacat |
35204180 |
T |
|
| Q |
101 |
ataagtttgagtcttgcagtttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatctatat |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35204179 |
ataagtttgagtcttgcagcttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatctatat |
35204080 |
T |
|
| Q |
201 |
gcttggtagtactactctttaacgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcttgaactaaaactttcttaatagatga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
35204079 |
gcttggtagtactactctttaacgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaactaaaactttcttaatagatga |
35203980 |
T |
|
| Q |
301 |
aaaaccacacaccaaataccaaaccaatcaaag |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35203979 |
aaaaccacacaccaaataccaaaccaatcaaag |
35203947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 25 - 329
Target Start/End: Original strand, 55859371 - 55859675
Alignment:
| Q |
25 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
55859371 |
cacctagcactatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagcttaa |
55859470 |
T |
|
| Q |
125 |
ttcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatctatatgcttggtagtactactctttaacg |
224 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
55859471 |
ttcttattgtgtgtaacagttttgagccagactaccatagcccacatacagttccacaccatttcaggatctatatgcttggtagtactactctctaacg |
55859570 |
T |
|
| Q |
225 |
tgatcttgtctaaagtagataataacaaaataatagcaatacactttgcttgaactaaaactttcttaatagatgaaaaaccacacaccaaataccaaac |
324 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55859571 |
tgatcttgtctaaagtagataataataaaacaatagcaatacactttgcatgaactaaaagtttcttaatagatgaaaaaccacacaccaaataccaaac |
55859670 |
T |
|
| Q |
325 |
caatc |
329 |
Q |
| |
|
||||| |
|
|
| T |
55859671 |
caatc |
55859675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 25 - 329
Target Start/End: Complemental strand, 29275227 - 29274923
Alignment:
| Q |
25 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
124 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
29275227 |
cacctagcactatggtttctagtcacctgaattgaatatagatgatgaaatgttccttgccactaaatgacaacatataagtttgagtcttgcagcttaa |
29275128 |
T |
|
| Q |
125 |
ttcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatctatatgcttggtagtactactctttaacg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
29275127 |
ttcctattgtgtgtaacagttttgagccagactaccatagcccacatacagttccacaccatttcaggatctatatgcttggtagtactactctctaacg |
29275028 |
T |
|
| Q |
225 |
tgatcttgtctaaagtagataataacaaaataatagcaatacactttgcttgaactaaaactttcttaatagatgaaaaaccacacaccaaataccaaac |
324 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29275027 |
tgatcttgtctaaagtagataataataaaacaatagcaatacactttgcatgaactaaaagtttcttaatagatgaaaaaccacacaccaaataccaaac |
29274928 |
T |
|
| Q |
325 |
caatc |
329 |
Q |
| |
|
||||| |
|
|
| T |
29274927 |
caatc |
29274923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 7414456 - 7414509
Alignment:
| Q |
263 |
atacactttgcttgaactaaaactttcttaatagatgaaaaaccacacaccaaa |
316 |
Q |
| |
|
||||||||||| |||||||||| ||| | ||| ||||||||| ||||||||||| |
|
|
| T |
7414456 |
atacactttgcatgaactaaaagtttatgaattgatgaaaaatcacacaccaaa |
7414509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 329
Target Start/End: Complemental strand, 3822656 - 3822354
Alignment:
| Q |
25 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
124 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
3822656 |
cacctagcactatagtttctaggcacctgaattgaatatagatgataatatgttccctgccactaaatgacagcatataagtttgagtcatgcagcttaa |
3822557 |
T |
|
| Q |
125 |
tt-cctattgtgtgtaacagttttgagccagactatcatagcccacatacag-ttccacaccatttcaggatctatatgcttggtagtactactctttaa |
222 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
3822556 |
ttccctattgtgtgtaatagttttgagccagactaccatagcccacatacagtttccacaccatttcaggatctatatgcttggcagtactactctctaa |
3822457 |
T |
|
| Q |
223 |
cgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcttgaactaaaactttcttaatagatgaaaaaccacacaccaaataccaa |
322 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3822456 |
cgtgagcttgtctaaagtagataatcacaaaacaatagcaat----tttgcatgaactaaaagtttcttaatagatgaaaaaccacacaccaaataccaa |
3822361 |
T |
|
| Q |
323 |
accaatc |
329 |
Q |
| |
|
||||||| |
|
|
| T |
3822360 |
accaatc |
3822354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 46267346 - 46267515
Alignment:
| Q |
25 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46267346 |
cacctagcactatggtttctaggcacctgcattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagcttaa |
46267445 |
T |
|
| Q |
125 |
ttcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatc |
195 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
46267446 |
ttcctattgtgtgtaacag-tttgagccagactatcatagtccacgtacagttccacaccatttcaggatc |
46267515 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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