View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_39 (Length: 343)
Name: NF20076_low_39
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 47 - 333
Target Start/End: Original strand, 50726044 - 50726330
Alignment:
| Q |
47 |
tgaaatgatgaaagacctccattgagccaaagaaggagaggtttattggagggttgagattgagcttcaaagaaccaatagaaaagagccctcccatgtt |
146 |
Q |
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| T |
50726044 |
tgaaatgatgaaagacctccattgagccaaagaaggagaggtttattggagggttgagattgagcttcaaagaaccaatagaaaagagccctcccatgtt |
50726143 |
T |
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| Q |
147 |
cttcattgacattgatgtaacctgaaaagtgtgaaattgatgggtttgaaggttgtcctggtagatcaattattctatcagtttcataactttcaacatt |
246 |
Q |
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| T |
50726144 |
cttcattgacattgatgtaacctgaaaagtgtgaaattgatgggtttgaaggttgtcctggtagatcaattattctatcagtttcataactttcaacatt |
50726243 |
T |
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| Q |
247 |
tatttcagatgctttaatgaacaatgaagtggtagtactagtagttaaaagaatgaaacataggatctggactagaaagacattcat |
333 |
Q |
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| T |
50726244 |
tatttcagatgctttaatgaacaatgaaatggtagtactagtagttaaaagaatgaaacataggatctggactagaaagacattcat |
50726330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 47 - 333
Target Start/End: Original strand, 50734058 - 50734344
Alignment:
| Q |
47 |
tgaaatgatgaaagacctccattgagccaaagaaggagaggtttattggagggttgagattgagcttcaaagaaccaatagaaaagagccctcccatgtt |
146 |
Q |
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| T |
50734058 |
tgaaatgatgaaagacctccattgagccagagaaggagaggtttattggagggttgagattgagcttcaaagaaccaatagaaaagagccctcccatgtt |
50734157 |
T |
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| Q |
147 |
cttcattgacattgatgtaacctgaaaagtgtgaaattgatgggtttgaaggttgtcctggtagatcaattattctatcagtttcataactttcaacatt |
246 |
Q |
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| T |
50734158 |
cttcattgacattgatgtaacctgaaaagtgtgaaattgatgggtttgaaggttgtcctggtagatcaattattctatcagtttcataactttcaacatt |
50734257 |
T |
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| Q |
247 |
tatttcagatgctttaatgaacaatgaagtggtagtactagtagttaaaagaatgaaacataggatctggactagaaagacattcat |
333 |
Q |
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| T |
50734258 |
tatttcagatgctttaatgaacaatgaaatggtagtactagtagttaaaagaatgaaacataggatctggactagaaagacattcat |
50734344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 77 - 311
Target Start/End: Original strand, 50737184 - 50737415
Alignment:
| Q |
77 |
agaaggagaggtttattggagggttgagattgagcttcaaagaaccaatagaaaagagccctcccatgttcttcattgacattgatgtaacctgaaaagt |
176 |
Q |
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| T |
50737184 |
agaaggagaggtttattggagggttgagattgagcttcaaagaaccaatagaaaagagccctcccatgatcttcattgacattgatgtaacctgaaaagt |
50737283 |
T |
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| Q |
177 |
gtgaaattgatgggtttgaaggttgtcctggtagatcaattattctatcagtttcataactttcaacatttatttcagatgctttaatgaacaatgaagt |
276 |
Q |
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| T |
50737284 |
gtgaaattggtggtgttgaaggttgtcctggtagatcaattattctatcagattcatagctttcaacatttatttcagatgctttaatgaacaatga--- |
50737380 |
T |
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| Q |
277 |
ggtagtactagtagttaaaagaatgaaacatagga |
311 |
Q |
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| T |
50737381 |
ggaagtggtaatagttaaaagaaagaaacatagga |
50737415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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