View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_40 (Length: 335)
Name: NF20076_low_40
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 38146117 - 38145807
Alignment:
| Q |
17 |
agttaatactccattttcaaagttatgttacatacaacaacttttttgaagcacttgcttccattttttattccaaccattaaggcaattacaacttatt |
116 |
Q |
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| T |
38146117 |
agttaatactccattttcaaagttatgttacatacaacaacatttttgaagcacttgcttccattttttattccaaccattaaggcaattacaacttatt |
38146018 |
T |
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| Q |
117 |
ttcatttacttcactgcaacaccaattaataacttgttggatttttattgttcatcatcaatttaaactagttatggtgatgattttttactagagatta |
216 |
Q |
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| T |
38146017 |
ttcatttacttcactgcaacaccaattaataacttgttggatttttattgttcatcatcaatttaaactagttatggtgatgattttttattagagatta |
38145918 |
T |
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| Q |
217 |
ggttcatgtattgttctactatcatttctggcgataaatcggtgaagtatcctttttctacgtccaatccttcttgtgctgccaacatctcaaccaaatt |
316 |
Q |
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| T |
38145917 |
ggttcatgtattgttctactatcatttctggcgataagtcggtgaagtatcctttttctacgtccaatccttcttgtgctgccaacatctcaaccaaatt |
38145818 |
T |
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| Q |
317 |
ttgaaccctat |
327 |
Q |
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| T |
38145817 |
ttgaaccctat |
38145807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 88 - 327
Target Start/End: Complemental strand, 38136033 - 38135798
Alignment:
| Q |
88 |
tccaaccattaaggcaattacaacttattttcatttacttcactgcaacaccaattaataacttgttggatttttattgttcatcatcaatttaaactag |
187 |
Q |
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| T |
38136033 |
tccaaccattaaggcaatcacaacttattttcatttactt----gcaacgccaattaataactagttggattttgattgttcatcaacaattataactag |
38135938 |
T |
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| Q |
188 |
ttatggtgatgattttttactagagattaggttcatgtattgttctactatcatttctggcgataaatcggtgaagtatcctttttctacgtccaatcct |
287 |
Q |
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| T |
38135937 |
ttatggtgatgattttttagccgagatcaggttcatgtatctttctactatcatttctggcgaaaagtcggtaaaatatcctttttctacatccaatcct |
38135838 |
T |
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| Q |
288 |
tcttgtgctgccaacatctcaaccaaattttgaaccctat |
327 |
Q |
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| T |
38135837 |
tcttgtgctgccaacatctcaaccaaattttgaaccctat |
38135798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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