View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_42 (Length: 329)
Name: NF20076_low_42
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 149 - 322
Target Start/End: Complemental strand, 29586362 - 29586189
Alignment:
| Q |
149 |
ttagaatattgtctcgttgagggcaccagttaccaggtatagaaggactccgaatcacagatgtccgctttcaggatctcatgacattgaattggttcag |
248 |
Q |
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| T |
29586362 |
ttagaatattgtctcgttgagggcaccagttaccaggtatagaaggactccgaatcacagatgtcctctttcaggatctcatgacattgaattggttcag |
29586263 |
T |
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| Q |
249 |
atgctagattgcatatatgccttattcgtcaatcaaataaggccttttgtattcaaggtcattttctgatgatg |
322 |
Q |
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| T |
29586262 |
atgctagattgcataaatgccttattcgtcaatcaaataaggccttttgtattcaaggtcattttctgaggatg |
29586189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 29580664 - 29580582
Alignment:
| Q |
50 |
gaacttgtaatcctgtttaatggagctggaattataaacatagttgctgaaaatatccatacacttgtgattcagatatctgg |
132 |
Q |
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| T |
29580664 |
gaacttgtgatcccatttaatggagctggaattgtagacatagtttctgataaaatcccaacacttgtgattctgatatctgg |
29580582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 29613450 - 29613532
Alignment:
| Q |
50 |
gaacttgtaatcctgtttaatggagctggaattataaacatagttgctgaaaatatccatacacttgtgattcagatatctgg |
132 |
Q |
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|||||||| |||| |||||||||||||||||| || ||||| ||||||| || |||| ||||||||||||| |||||||| |
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| T |
29613450 |
gaacttgtgatcccatttaatggagctggaattgtagacataattgctgataaaatcccaacacttgtgattctaatatctgg |
29613532 |
T |
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