View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_47 (Length: 315)
Name: NF20076_low_47
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_47 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 48096629 - 48096926
Alignment:
| Q |
19 |
atcatgtctatataaaaagatcaaacaattaagattatcaatttt-taattggccaaaacttctgatgtgagtcgtccggtctctatacaacgcctcaac |
117 |
Q |
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| T |
48096629 |
atcatgtctatataaaaagatcaaacaattaagattatgaattttttaattggccaaaacttcttatgtgagtcgtccagtctctatacaacgcctcaac |
48096728 |
T |
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| Q |
118 |
caaatttaatctacctcaccccagtaacacacacgcacgcgcgcacccacacacgcataatatggtgagagtatacatttaaataggtttatgaaacaag |
217 |
Q |
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| T |
48096729 |
caaatttaatctacctcaccccactaacacacacgcacgcgcgcacccacacatacataatatggtgagagtatacatttaaataggtttatgaaacaag |
48096828 |
T |
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| Q |
218 |
acttaaatgtatagtatatagatatagataaagtatcgaccttaacaattttattaattcgtaaagactcatgaaaacacatctcttatagagcaata |
315 |
Q |
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| T |
48096829 |
acttaaatgtatagtatatagatatagataaagtatcgaccttaacaattttattgattcgtaaagactcatgaaaacacatctcttaaagagcaata |
48096926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 142 - 315
Target Start/End: Original strand, 48098897 - 48099063
Alignment:
| Q |
142 |
taacacacacgcacgcgcgcacccacacacgcataatatggtgagagtatacatttaaataggtttatgaaacaagacttaaatgtatagtatatagata |
241 |
Q |
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| T |
48098897 |
taacatacacgcgcgcgcgcacacccacacgcataatacggtgagagtaaacatttaatttgacttatgaaacaagacttgaatgtatagt------ata |
48098990 |
T |
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| Q |
242 |
tagataaagtatcgaccttaacaattttattaattcgtaaagactcatgaaaacacatctcttatagagcaata |
315 |
Q |
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| T |
48098991 |
tagataaagtataagccttaacaattttattgattcataaaga-tcatgaaaacacattttttaaagagcaata |
48099063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 305
Target Start/End: Original strand, 48095536 - 48095677
Alignment:
| Q |
158 |
gcgcacccacacacgcataatatggtgagagtatacatttaaataggtttatgaaacaagacttaaatgtatagtatatagatatagataaagtatcgac |
257 |
Q |
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| T |
48095536 |
gcgcacccacacatacataatataacgaaagcaaacatttaattagacttatgaaataagactcaaatgtatattatat------agataaattatcaac |
48095629 |
T |
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| Q |
258 |
cttaacaattttattaattcgtaaagactcatgaaaacacatctctta |
305 |
Q |
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| T |
48095630 |
gttaacaattttattgattccaagagactcacgaaaacacatctctta |
48095677 |
T |
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