View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_48 (Length: 315)
Name: NF20076_low_48
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 42163053 - 42162768
Alignment:
| Q |
13 |
aaggaaggtgtgctgctgcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaacgtacgcatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42163053 |
aaggaaggtgtgctgctgcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaacgtacgcatg |
42162954 |
T |
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| Q |
113 |
tgaagtgtgtggagtttcttgcactggtgaaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggagtacaaaggttttggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42162953 |
tgaagtgtgtggagtttcttgcactggtgaaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggagtacaaaggttttggc |
42162854 |
T |
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| Q |
213 |
cttcaagaggccgtggatttcgttatcaaacatcgtcttgacgaagggtttgctggtcttattgctgtgtctagcaagggtgaagt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42162853 |
cttcaagaggccgtggatttcgttatcaaacatcgtcttgacaaagggtttgccggtcttattgctgtgtctagcaagggtgaagt |
42162768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 5479680 - 5479393
Alignment:
| Q |
13 |
aaggaaggtgtgctgctgcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaacgtacgcatg |
112 |
Q |
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| T |
5479680 |
aaggaagatgtgctgctgccacgtcaacaggcgggctaatgaacaagatgattggtcggattggtgactcacctttgataggagctgggacctacgcgtg |
5479581 |
T |
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| Q |
113 |
tgaagtgtgtggagtttcttgcactggtgaaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggagtacaaaggttttggc |
212 |
Q |
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| T |
5479580 |
taacctagctggcgtatcatgcaccggtgaaggcgaggctatcatacgtggcactttggcgcgtgaggtgtcggctgtgatggaatacaaaggtcttggt |
5479481 |
T |
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| Q |
213 |
cttcaagaggccgtggatttcgttatcaaacatcgtcttgacgaagggtttgctggtcttattgctgtgtctagcaagggtgaagttg |
300 |
Q |
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|||||||| || ||||||||||| || || ||||| | || ||||| | |||||| || |||||||| ||||| || || ||||||| |
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| T |
5479480 |
cttcaagaagcagtggatttcgtcattaagaatcgtttggatgaaggatatgctggactcattgctgtttctagtaaaggagaagttg |
5479393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 47171192 - 47171477
Alignment:
| Q |
13 |
aaggaaggtgtgctgctgcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaacgtacgcatg |
112 |
Q |
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||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || ||||| |
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| T |
47171192 |
aaggaagatgtgctgctgcaacctcaactggagggctaatgaacaaaatgagtggtcgaattggtgattcacctctcattggtgctggaacttatgcatg |
47171291 |
T |
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| Q |
113 |
tgaagtgtgtggagtttcttgcactggtgaaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggagtacaaaggttttggc |
212 |
Q |
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|||||||||||||||||| |||||||||||||| || || ||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| | || |
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| T |
47171292 |
tgaagtgtgtggagtttcatgcactggtgaaggtgaagctatcattcgtggcactctcgcacgtgaagtggctgcagttatggagtacaaaggctatgaa |
47171391 |
T |
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| Q |
213 |
cttcaagaggccgtggatttcgttatcaaacatcgtcttgacgaagggtttgctggtcttattgctgtgtctagcaagggtgaagt |
298 |
Q |
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|||||| | || |||||||| || || || |||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
47171392 |
cttcaacaagctgtggattttgtgattaaggatcgtcttgatgaagggtttgctggtcttattgctgtgtccaacaagggtgaagt |
47171477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 45737249 - 45737174
Alignment:
| Q |
28 |
ctgcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaac |
103 |
Q |
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|||||||||| ||||| ||| || ||||||||||| |||||||||||| ||| | || |||||||||||||||| |
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| T |
45737249 |
ctgcaacatcaaccggtggattagtgaacaaaatggttggtcgaattggcgacacgccactcataggtgctggaac |
45737174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 45731917 - 45731844
Alignment:
| Q |
30 |
gcaacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaac |
103 |
Q |
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| T |
45731917 |
gcaacatcaactggtggattagtgaacaaaatggttggtcgaattggtgacacgccactcataggtgctggaac |
45731844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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