View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_51 (Length: 310)
Name: NF20076_low_51
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_51 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: scaffold0294 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 16153 - 15852
Alignment:
| Q |
1 |
cattgtttaggcaacatagcacatccactcatcagataagacgtgtcccg-tgtcggacatgcgctggtgtctgacatcaacacgtatatttagattaaa |
99 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16153 |
cattgtttaggcaacgtagcacatccactcatcagataagacgtgtcttgatgtcggacatgcgctggtgtctgacaccaacacgtatatttagattaaa |
16054 |
T |
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| Q |
100 |
ttatgtaattttttcaaattac-----ataa-----tgtcattatccgctaaccgtgtttgtgcttcataggctaaaccaactctttatgaaaccaacct |
189 |
Q |
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| T |
16053 |
t-atgtaattttctcaaattagtatcgatatcggtgtgtcattgtccgctaaccgtgtctgtgtttcataggataaac-aactctttatgaaaccaacct |
15956 |
T |
|
| Q |
190 |
ttattgtcactattgattaattaagagatatatgaaattgtgtacctatgataaaccaagcggatctccagtaaccggttttggacctaactgccggctg |
289 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || || || |
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| T |
15955 |
ttattgtcactattggttaattaagagatatatgaaattgtgtacctatgataaaccaagcggatctccagtaaccagatttggacctaacggcaggttg |
15856 |
T |
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| Q |
290 |
tcct |
293 |
Q |
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|||| |
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| T |
15855 |
tcct |
15852 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 11675305 - 11675227
Alignment:
| Q |
219 |
atatgaaattgtgtacctatgataaaccaagcggatctccagtaaccggttttggacctaactgccggctgtcctttgc |
297 |
Q |
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| T |
11675305 |
atatgaaattgtgtaccaatgataaaccaagcggatctccaataaccagttttggacctaactgcctgctgtcctttgc |
11675227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 11683584 - 11683506
Alignment:
| Q |
219 |
atatgaaattgtgtacctatgataaaccaagcggatctccagtaaccggttttggacctaactgccggctgtcctttgc |
297 |
Q |
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| T |
11683584 |
atatgaaattgtgtaccaatgataaaccaagcggatctccaataaccagttttggacctaactgcctgctgtcctttgc |
11683506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 11701639 - 11701566
Alignment:
| Q |
219 |
atatgaaattgtgtacctatgataaaccaagcggatctccagtaaccggttttggacctaactgccggctgtcc |
292 |
Q |
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| T |
11701639 |
atatgaaattgtttacctatgataaaccaagcggatctccaataaccagatttaaacctaactgcaggctgtcc |
11701566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 11695838 - 11695776
Alignment:
| Q |
231 |
gtacctatgataaaccaagcggatctccagtaaccggttttggacctaactgccggctgtcct |
293 |
Q |
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| T |
11695838 |
gtacctatgataaaccaagcggatctccaatagccagttttggatctaacggcaggttgtcct |
11695776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 38143287 - 38143234
Alignment:
| Q |
67 |
gtgtctgacatcaacacgtatatttagattaaattatgtaattttttcaaatta |
120 |
Q |
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| T |
38143287 |
gtgtctgacaccaacacatataattacattaaattatgtgattttttcaaatta |
38143234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 4864127 - 4864074
Alignment:
| Q |
67 |
gtgtctgacatcaacacgtatatttagattaaattatgtaattttttcaaatta |
120 |
Q |
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| T |
4864127 |
gtgtccgacaccaacacatataattaaattaaattatgtcattttttcaaatta |
4864074 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 40361749 - 40361802
Alignment:
| Q |
67 |
gtgtctgacatcaacacgtatatttagattaaattatgtaattttttcaaatta |
120 |
Q |
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| T |
40361749 |
gtgtctgacaccaacagatataattacactaaattatgtaattttttcaaatta |
40361802 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 33230776 - 33230736
Alignment:
| Q |
80 |
acacgtatatttagattaaattatgtaattttttcaaatta |
120 |
Q |
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|||| |||||||| |||||||||||||| |||||||||||| |
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| T |
33230776 |
acacatatatttacattaaattatgtaaatttttcaaatta |
33230736 |
T |
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