View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_52 (Length: 303)
Name: NF20076_low_52
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 2178683 - 2178409
Alignment:
| Q |
15 |
aatattcagggagccattcataaacaacttctaactttttcttctaacttgaaagcaaat----ctctctcactcaaccataatttcatcaaatatacga |
110 |
Q |
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| T |
2178683 |
aataatcagggagccattcataaacaacttctaactttttcttctaacttgaaagcaaattaatctctctcgctcaaccataatttcatcaaatatacgg |
2178584 |
T |
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| Q |
111 |
cgtgaaaaatcaatgtcaactaaaacacgagcataattaccaaaaaattcttttttgtgcagcatatcaataaccaaaggtgtgcctattacgccagcaa |
210 |
Q |
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| T |
2178583 |
tgtgaaaaatcaatgtcaactaaaacacgagcataattaccaaaaa-ttcttttttgtgcagcatatcaataaccaaaggtgtacctattacgccagcaa |
2178485 |
T |
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| Q |
211 |
tttcaaggagggtgcaatcgtgccaatactcttgaggtaattccatcagtccgatccaaacctgggcacatgagtt |
286 |
Q |
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| T |
2178484 |
tttcgaggagggtgcaatcgtgccaatactcttgaggtaattccatcagtccgatccaaacctgggcacatgagtt |
2178409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 13170323 - 13170402
Alignment:
| Q |
55 |
cttctaacttgaaagcaaatctctctcactcaaccataatttcatcaaatatacgacgtgaaaaatcaatgtcaactaaa |
134 |
Q |
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| T |
13170323 |
cttctaacttgcaagcaaattcctcacactcaaccataatttcatcaaatacacggtgtgaaaaataaatgccaactaaa |
13170402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 15623572 - 15623533
Alignment:
| Q |
84 |
tcaaccataatttcatcaaatatacgacgtgaaaaatcaa |
123 |
Q |
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| T |
15623572 |
tcaaccataatttcatcaaatatacgacaagaaaaatcaa |
15623533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 30757829 - 30757895
Alignment:
| Q |
84 |
tcaaccataatttcatcaaatatacgacgtgaaaaatcaatgtcaactaaaacacgagcataattac |
150 |
Q |
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|||||||| ||||||||||| ||| | | |||||||||| |||||||| |||||||||||||||| |
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| T |
30757829 |
tcaaccattatttcatcaaagatatggagggaaaaatcaacatcaactaagacacgagcataattac |
30757895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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