View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_56 (Length: 285)
Name: NF20076_low_56
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 33337196 - 33337449
Alignment:
| Q |
19 |
ttaatgagactccaggtaaatacatgcataaatattataatttacatatagtgctgaagggtaaataaataattaattttggttttgtagtttgagaggg |
118 |
Q |
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| T |
33337196 |
ttaatgagactccaggtaaatacatgcataaatattataa----catataatgctgaagggtaaataa-taattaattttggttttgtagtttgagaggg |
33337290 |
T |
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| Q |
119 |
aaaaaggttttttaaatatgaaatcagagaataataata--aggtgaaaatggagaaggaagaagtgggaaagacactaaaaagagcattgagattttac |
216 |
Q |
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| T |
33337291 |
aaaaaggttttttaaatatgaaatcagagaataataatataaggtgaaaatggagaaggaagaagtgggaaagacactaaaaagagcattgagattttac |
33337390 |
T |
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| Q |
217 |
tcaacactgcaaactgaagatggtttctggcctggtgactatggtggtcctttgcttct |
275 |
Q |
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| T |
33337391 |
tcaacactgcaaactgaagatggtttctggcctggtgattatggtggtcctttgtttct |
33337449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 173 - 275
Target Start/End: Complemental strand, 35130702 - 35130600
Alignment:
| Q |
173 |
aggaagaagtgggaaagacactaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtgactatggtggtcctttgct |
272 |
Q |
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| T |
35130702 |
aggaaaaagtgggaaagacactaaaaagagcattgagatgttactcaacattgcaaactgaggatggtttctggcctggtgactatggtggtcctttgtt |
35130603 |
T |
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| Q |
273 |
tct |
275 |
Q |
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| T |
35130602 |
tct |
35130600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 35130819 - 35130718
Alignment:
| Q |
83 |
ataaataattaattttggttttgtagtttgagagggaaaaaggttttttaaatatgaaatcag---agaataataataaggtgaaaatggagaaggaaga |
179 |
Q |
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| T |
35130819 |
ataaatacttaattttggttttgtagtttgaaagggaaaaaggtgttttaaatatgaaatcagagaagaataataataaggtgaaaatggagaaggaaga |
35130720 |
T |
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| Q |
180 |
ag |
181 |
Q |
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| T |
35130719 |
ag |
35130718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 35130935 - 35130896
Alignment:
| Q |
19 |
ttaatgagactccaggtaaatacatgcataaatattataa |
58 |
Q |
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| T |
35130935 |
ttaatgagactccaggtaaatacatgcataaatattataa |
35130896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 22502355 - 22502438
Alignment:
| Q |
180 |
agtgggaaagacactaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtgactatggtgg |
263 |
Q |
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| T |
22502355 |
agtgagaaggacactaaaaagagcactgagaaattactcaacactgcaggttgaagatggtttctggccgggtgactatggtgg |
22502438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 22502226 - 22502266
Alignment:
| Q |
87 |
ataattaattttggttttgtagtttgagagggaaaaaggtt |
127 |
Q |
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| T |
22502226 |
ataaataattttggttttgcagtttgagagggaaaaaggtt |
22502266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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