View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_58 (Length: 283)
Name: NF20076_low_58
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_58 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: scaffold0294 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 283
Target Start/End: Complemental strand, 16481 - 16230
Alignment:
| Q |
4 |
atatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcatcataatttaaaaagaatgtaaaaagtaaacata |
103 |
Q |
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| T |
16481 |
atatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcatcataat-----------gtaaaaagtaaacata |
16393 |
T |
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| Q |
104 |
taaattaatccatttaaaaatagagtaactcaaacatatcctggtgtcggacacgcgtttgtgtcagacataagaaagcttaaatagtagagttttttgg |
203 |
Q |
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| T |
16392 |
taaattaatccatt----------------caaacatatcctggtgtcagacacgcgtttgtgtctgacataagaaagcttaaatagtagagttttttgg |
16309 |
T |
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| Q |
204 |
taacaaaatttagttaagttaggttcaagagcttcatgcgagtcataccaaatatcaagattcaaagagccttgacactt |
283 |
Q |
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| T |
16308 |
taacaaaatttagttaagttaggttcaagagcttcatgctagtcataccaaatatcaagattcaaa-agccttgacactt |
16230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 11701834 - 11701757
Alignment:
| Q |
6 |
atatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcatcataatttaaaaa |
83 |
Q |
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| T |
11701834 |
atatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattctcatcaccatttaaaaa |
11701757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 11797878 - 11797814
Alignment:
| Q |
6 |
atatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcat |
70 |
Q |
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| T |
11797878 |
atatgataccctctctgccacttccacacctaaacataacattcataattcatttcaattctcat |
11797814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 11675941 - 11675880
Alignment:
| Q |
6 |
atatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattct |
67 |
Q |
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| T |
11675941 |
atatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattct |
11675880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 11684220 - 11684159
Alignment:
| Q |
6 |
atatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattct |
67 |
Q |
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| T |
11684220 |
atatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattct |
11684159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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