View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_6 (Length: 514)
Name: NF20076_low_6
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 191 - 504
Target Start/End: Original strand, 6116882 - 6117190
Alignment:
| Q |
191 |
gaggatgctaactccatatacttgttattcttaattgatttaattaaaaatgtatagtggactagttgttcaaattgaggtcatgtcttattttctctcg |
290 |
Q |
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| T |
6116882 |
gaggatgctaactccatatacttgttattcataattgatttaattaaaaatgtatagtggact-----ttcaaattgaggtcatgtcttattttctctcg |
6116976 |
T |
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| Q |
291 |
ccagttgtgtttcaaacttgttaagcattatggtgtttttggaaaaacatcagattctcatgatctaagatagtcttagcagaagatccagatcattcat |
390 |
Q |
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| T |
6116977 |
ccagttgtgtttcaaacttgttaagcattatggtgtttttggaaaagcatcagattctcatgatctaagatagtcttagcagaagatccagatcattcat |
6117076 |
T |
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| Q |
391 |
ttgaaaagaatgtatgtttatcaatgaaaatatattctacgttttgtaggaattacggtgtgtttatcaatgattttgtcaacataataattctgattaa |
490 |
Q |
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| T |
6117077 |
ttgaaaagaatgtatgtttatcaatgaaaatatattctacgttgtgtaggaattacggtgtgtttatcaatgattttgtgaacataataattctgattaa |
6117176 |
T |
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| Q |
491 |
tttatttgatgatg |
504 |
Q |
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| T |
6117177 |
tttttttgatgatg |
6117190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 6122589 - 6122464
Alignment:
| Q |
101 |
cttcaatatagtttgaattgacttctgaaaattaggatatagtaagagaaccacttctgatatagtcattgaaaaggtagtc----ttatgcttgaggat |
196 |
Q |
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| T |
6122589 |
cttcaatacagtttgaattgacttctgaaaaatataacatagtaagagaatcacttctgaaatattcattgaaaatatagtcttatttatgcttgaggat |
6122490 |
T |
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| Q |
197 |
gctaactccatatacttgttattctt |
222 |
Q |
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| T |
6122489 |
tccgactccatatacttgttattctt |
6122464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 6116728 - 6116880
Alignment:
| Q |
5 |
aaggaaaatttgaggcagtgaaggtactatactaccaaccttttattactattgtgaattttgtttctgtttcacattgtgt--tttgattctcttagct |
102 |
Q |
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| T |
6116728 |
aaggaaaatttgaggcagtaaaggtactc--ctaccaacctttaactaatactgtgaattttgtttctgcttgatattttgtattttcattcttttaatt |
6116825 |
T |
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| Q |
103 |
tcaatatagtttgaattgacttctgaaaattaggatatagtaagagaaccacttc |
157 |
Q |
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| T |
6116826 |
tcaatataatttgaattgactcctgaaaaataggacatagttatagaatcacttc |
6116880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 6122706 - 6122639
Alignment:
| Q |
9 |
aaaatttgaggcagtgaaggtactatactaccaaccttttattactattgtgaattttgtttctgttt |
76 |
Q |
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| T |
6122706 |
aaaatttgaggcggtgaaggtactgtactaccaactttttactaatactgtgaattttgtttctgttt |
6122639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 417
Target Start/End: Complemental strand, 6122404 - 6122313
Alignment:
| Q |
327 |
ttttggaaaaacatcagattctcatgatctaagatagtcttagcagaagatccagatcattcatttgaaaagaatgta-tgtttatcaatga |
417 |
Q |
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| T |
6122404 |
ttttgcaaaaacatcagattttcatgatgtaggatagtcttatcataaaatccagatcattcatacgagaagaatgtattttttatcaatga |
6122313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 13752902 - 13752957
Alignment:
| Q |
391 |
ttgaaaagaatgtatgtttatcaatgaaaatatattctacgttttgtaggaattac |
446 |
Q |
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| T |
13752902 |
ttgaaaaaaatgtatgtttatcaatcaaaatacattcaaccttttgtaggaattac |
13752957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 13752825 - 13752872
Alignment:
| Q |
304 |
aaacttgttaagcattatggtgtttttggaaaaacatcagattctcat |
351 |
Q |
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| T |
13752825 |
aaacatgttaagctttatggtgtttttgcaaaaacatcagattttcat |
13752872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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