View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_66 (Length: 254)
Name: NF20076_low_66
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 26840056 - 26840189
Alignment:
| Q |
18 |
tattagtggaagcagagatagagaaggggttcattattctcatccttcgtgcaggaaggatagttggttcggtggcgggagagaggtctctacttaccct |
117 |
Q |
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| T |
26840056 |
tattagtggaagcagagatagagaaggggttcattattctcatccttcgtgcaggaaggatagttggttcggtggcgggagagaggtctctactgaccct |
26840155 |
T |
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| Q |
118 |
tgcgtatccgaatcccaaccatacaataaaactc |
151 |
Q |
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| T |
26840156 |
tgcgtatccgaatcccaaccatacaataaaactc |
26840189 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 26840734 - 26840791
Alignment:
| Q |
187 |
cacacgcccacaaaaaacaactaactacgacgtcgacaataggataaccacacctttg |
244 |
Q |
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| T |
26840734 |
cacacgcccacaaaaaacaactaactacgacgttgacaataggacaaccacacctttg |
26840791 |
T |
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