View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_7 (Length: 507)
Name: NF20076_low_7
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Original strand, 1986298 - 1986784
Alignment:
| Q |
20 |
gttgagggcttgagggcatttaa-----atactgttgttgatatatgggggagtctggttttcaaatcttattggaccaagaa-------tatc--cctc |
105 |
Q |
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| T |
1986298 |
gttgagggcttgagggcatttaaggataatactgttgttgatacatgggggagtctggttttcaaatcttattggctgtaggaaagatggtatggacctc |
1986397 |
T |
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| Q |
106 |
aagtgataagataattgtagaagtggctgaaacttcacgaaattgttttaagttgcttgtcctttggcacacatgacatgtgtgataatatggtgtactc |
205 |
Q |
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| T |
1986398 |
aagtgataagataattgtagaagtggctgaaacttcacgaaattgttttaagttgcttgtcctttggcacacatgacatgtgtgataatatggtgtactc |
1986497 |
T |
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| Q |
206 |
tattgttcgggtcaactcactcaacccacaaacggtcggttgagttggataattggatgaacttgattttcattttaattaactcatctttattaggttg |
305 |
Q |
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| T |
1986498 |
tattgttcgggtcaactcactcaacccacaaacggtcggttgagttggataatcggatgaacttggttttcactttaattaactcatctttattaggttg |
1986597 |
T |
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| Q |
306 |
gattttggttttatcgatttgaaattcactaaacctaacttgaacccaacaatagagatttaatnnnnnnnnttaagtttttc-tttttataaacaaaat |
404 |
Q |
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| T |
1986598 |
gattttggtttgatcgatttgaaattcactaaacctaacttgaacccaacaatagagatttaataaaaaaaattaagtttttcttttttataaacaaaat |
1986697 |
T |
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| Q |
405 |
atatactctaatttattctctgttcttattttctaaatttgtattccctcgagatgtaccataatctcatttttcaaacataaaatc |
491 |
Q |
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| T |
1986698 |
atatactctaatttattctctcttcttattttctaaatttgtattccctcgcaatgtactataatctcgtttttcaaacgtaaaatc |
1986784 |
T |
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